KEGG   Xenopus tropicalis (tropical clawed frog): 448444
Entry
448444            CDS       T01011                                 
Symbol
yars1
Name
(RefSeq) tyrosine--tRNA ligase, cytoplasmic
  KO
K01866  tyrosyl-tRNA synthetase [EC:6.1.1.1]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    448444 (yars1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:xtr01007]
    448444 (yars1)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:xtr03016]
    448444 (yars1)
   03029 Mitochondrial biogenesis [BR:xtr03029]
    448444 (yars1)
Enzymes [BR:xtr01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.1  tyrosine---tRNA ligase
     448444 (yars1)
Amino acid related enzymes [BR:xtr01007]
 Aminoacyl-tRNA synthetase
  Class I (A)
   448444 (yars1)
Transfer RNA biogenesis [BR:xtr03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    448444 (yars1)
 Prokaryotic type
    448444 (yars1)
Mitochondrial biogenesis [BR:xtr03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    448444 (yars1)
SSDB
Motif
Pfam: tRNA-synt_1b tRNA_bind
Other DBs
NCBI-GeneID: 448444
NCBI-ProteinID: NP_001004987
Xenbase: XB-GENE-491608
UniProt: Q6DIJ1
Position
2:90191847..90212521
AA seq 528 aa
MGDGLTPEGKAQLITRNLQEVLGEDKMKEILKERPLRIYWGTATTGKPHVAYFVPMSKIA
DFLKAGCEVTILFADLHAYLDNMKAPWDLLELRTRYYEQVIQAMLQSIGVPLERLRFIRG
TEFQLSKEYTLDVYRLSSVVTQHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD
AQFGGVDQRKIFTFAEKYLPALGYAKRIHLMNPMVPGLTGAKMSSSEEESKIDLLDSPAD
VKKKLKKAFCEPGNIENNGVLSFVRHVLFPLKSEFVVLRDEKFGGNKTYTDFETLEKDFT
EQLVHPGDLKASVEKALNKLLDPIREKFNSPEMKKLSNDAYPGASKQKTVPKGSTKNSGP
EEIDPSLLDLRVGKILSVRQHPDADSLYVESVDVGEENPRCVVSGLVQYVPSDQLLGRSV
VLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGE
LKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSIS
NT seq 1587 nt   +upstreamnt  +downstreamnt
atgggtgacggcttaacacctgaggggaaggcacagctcatcacacgaaatctccaggag
gtccttggagaggacaaaatgaaggaaatcctgaaagagagacctctgcggatatactgg
ggcacagcaaccacaggaaaaccacatgtggcttattttgttcctatgtccaagatcgca
gacttcctgaaagctggttgtgaggtgaccatcctgtttgcagacctgcatgcatattta
gataatatgaaagcaccttgggatctgctggagcttcgaaccagatactatgagcaggtt
atccaggccatgctacagagcattggagttccacttgagaggttgcgattcattcgagga
acagaatttcaactcagcaaagagtacactctggatgtatacagactgtcttctgtagtt
actcagcatgatgctaagaaagctggagctgaggtagtaaaacaagtggaacacccgctg
ctcagtgggcttctgtacccagggttgcaggctctggatgaggaatacttgaaggtagat
gctcaatttggaggagttgaccaaaggaaaatcttcacatttgctgaaaagtaccttcca
gctctcggttatgcaaaacgtattcacctgatgaatcctatggttccaggactcactggg
gctaaaatgagctcctctgaggaggaatccaaaattgatctcctggactctcctgcagat
gtgaaaaaaaaattaaagaaggctttctgtgagcctgggaatatagaaaacaatggggtt
ttaagctttgtcaggcatgtcctctttcccctaaaatcagaatttgtggttctacgtgat
gagaaatttggaggaaataaaacttacacagattttgaaacactagagaaagattttact
gaacagcttgttcatcctggggatctgaaggcctcagtggagaaagctttgaacaagttg
ttagatccaatcagagaaaagtttaacagcccagaaatgaagaaactgagtaatgatgca
tatcctggtgccagcaaacaaaagacagtgcctaaaggttccactaaaaactctgggcct
gaggagatcgatccttctcttttagatctgcgggttgggaagattctcagtgtgaggcag
catccagatgcagacagcctgtatgtggagtcagtggacgtgggtgaggaaaatccacgt
tgtgtggtcagcgggcttgtgcaatatgttccctctgaccaactgctgggccgctcagta
gttttgctgtgcaacttaaaaccacagaagatgcgaggaatcgagtcccagggcatgctg
ctttgcgcatctacggaaggggaacaaaaacaagtggaaccacttgaccctcctacaggt
tctgctccaggtgagcggatctatattgagggatatgagaatggagaaccagagggagag
ctcaaacctaagaagaaagtatttgagaagttgcaggttgacttcaggatttcagatgat
ttatgtgctcagtggaaagggaagaattttctgaccaaactgggatctgttacctgtaaa
actctgcgaggtggtagtattagttga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (32)   

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