KEGG T01011: 549105

Xenopus tropicalis (western clawed frog): 549105

Entry

549105 CDS T01011

Gene name

lig3

Definition

ligase III, DNA, ATP-dependent (EC:6.5.1.1)

Orthology

K10776

DNA ligase 3 [EC:6.5.1.1]

Organism

xtr Xenopus tropicalis (western clawed frog)

Pathway

xtr03410

Base excision repair

Module

xtr_M00296

BER complex

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:xtr03410]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

Xenbase:

UniProt:

Position

AA seq 893 aa
MRAFLRLLAYQTKRTLGQSLTKVPLRVIFHACWSQSPLHSALHFQFFLRVTHFSNMAEQR
YCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLERARA
TTKKIDDLTELEGWQELQDCDKNLISQHVTELATKTAATPRKKTPSKEKQSPAVQGTTST
TAPAASPSLKFSGFSAKPSQSSSPPSSSTGSSLSTAKCDPKHKDCLLREFRKLCAMVAEQ
PSYNSKTQIIRDFLTKGTSGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKHFSRIFNC
NQEEMVRDLEQGDVSETVRIFFEESKCFAPASKSLLTIHEVDDLLTKLSKMTKEEDQQNV
LEDIAHRCTSNDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYDAFKASRNLGDVVERVLR
NEQQAPGMKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHKN
GDHFSYFSRSLKPVLPHKVAHFKDFIPKAFPGGNSMILDAEVLLIDTNTGKPLPFGTLGV
HKKAAFKDANVCLFVFDCIYFNGVSLMDRPLSERRKFMRDNMVEIPNHILFSEMKHVTKA
SDLADMITRVIREGLEGLVLKDLKSNYEPGKRHWLKVKKDYLNEGAMADTADLAVLGAYY
GKGANGGIMSIFLMGCYDPESQKWCTVTKCSSGYDDATLQRLQKELNMVKISKDPSKIPS
WLKINKNYFPDFIIHDPKKAPIWEITGAEYSKAEAHTAAGLSIRFPRCTRFRDDKDWKTA
TTLQQLKELYRLSKEKSDFNITATSSQDEDGSSESSSRENEGNSRQTASGSMVKKSKNAP
SKSPGKDKTSESTKLPPPQKKEELPKAEKRKSQTPKTVQSKKVRKQHIEKCIQ

NT seq 2682 nt +upstreamnt +downstreamnt
atgagggcatttcttagacttctggcatatcagaccaaaaggacacttggccagtcctta
acaaaagttcctttacgagttatttttcatgcctgttggagccagtcgcctctccacagt
gctttgcacttccaattctttttaagagttacacatttctccaacatggcggaacagcga
tactgtgtggaatatgcaaaacgtgggactgctggttgcaagaaatgcaaggagaagatt
ggaaagggtttggtacgcataggtaaaatagtgccaaacccttttagcgagtctgctggg
gacatgaaggagtggtaccacatcaagtgcatgtttgagaaactggagagagcgcgggca
actacaaaaaaaattgatgatctgacagaactggaaggttggcaggaacttcaagactgt
gataaaaacctaatcagccagcatgtcactgaacttgctacaaaaacagcagctacacct
cgaaaaaagactccgtccaaggaaaaacaatcaccggcagtacaaggaacaacttccact
acagcaccagcagctagtccctctctaaaattttcaggtttctctgcaaaacccagtcaa
tcatcaagcccaccaagctcaagcactggctccagtctttcaactgcaaagtgtgaccca
aaacataaggactgtcttctgcgtgagttccgcaagctatgtgcaatggttgcggaacag
ccaagctacaacagcaaaacacagatcattcgtgatttcctaaccaagggaacaagtggc
gatggttttcatggtgacacatatctgacagtaaaactgctattaccaggagttatcaag
tctgtgtacaacctcaatgataagcagattgttaaacactttagtcgtatttttaattgt
aaccaggaggagatggttcgggacctagaacagggagatgtgtctgaaactgtgcgtatc
ttctttgaggaaagtaaatgctttgcaccagcttctaagagtttactgacaatccatgaa
gttgatgatttgcttactaaactatcaaaaatgactaaagaagaagatcaacagaatgtc
ctagaggacattgctcacaggtgcaccagtaatgatcttaaatgcattatccgcctgatt
aaacatgacttgaaaatgaactctggagccaaacacgtgctggatgctctagatcctaat
gcatatgatgcatttaaagcttcgcgcaatctaggggatgtagtagaacgtgttttgcgc
aacgagcagcaggctccaggaatgaaacgaactcttagtgtccaggcttcattaatgacc
ccagttcagcctatgctggctgaagcttgcaaatctatagagtatgccatgaaaaagtgt
cccaatggtatgtatgctgaaataaagtatgatggtgaaagagtccaagtacataagaat
ggagatcacttcagctacttcagccgcagtctgaagccagtgctgccccataaggttgct
cattttaaggattttatacctaaagcatttccaggaggaaacagtatgatcctggatgca
gaagttcttcttatagataccaatactggcaagccacttccatttggcacattaggtgtt
cataagaaagctgctttcaaagatgccaatgtgtgcttgtttgttttcgattgcatttac
ttcaatggagtgagcttaatggatcggccacttagtgagcgccgaaagtttatgcgggat
aacatggttgaaatccctaatcacattctgttctctgagatgaaacatgtcacaaaagct
tctgatctggctgacatgatcacccgtgttatccgtgagggattggagggtctggtatta
aaggacttaaagagtaattatgagccagggaaacgtcattggcttaaagtaaagaaggat
tacttgaatgaaggtgcaatggcagacaccgctgacttggcagttttgggagcttattat
ggaaagggagcaaatgggggtataatgtccatctttctcatgggttgctatgatcctgaa
agtcagaagtggtgcactgtgacaaaatgttcaagtggttatgatgatgctactctgcaa
cgccttcagaaggagcttaacatggtcaaaatcagcaaggatccatctaagattccatca
tggcttaaaatcaacaagaactatttcccagatttcattatacatgatcccaagaaagct
cccatttgggaaattacaggtgcagagtactcaaaggcagaggctcatacagctgctggg
ttatccattcgcttcccacgctgcacacgtttccgtgatgataaggactggaaaacagcc
actacactccaacagctaaaggaactttatcgtctctcaaaagaaaaatctgactttaac
atcactgctacatcctctcaggatgaggatggttcatctgaaagcagtagtcgagagaat
gaaggaaactccaggcaaactgcatcaggcagcatggttaagaaatcgaaaaatgctcct
tccaaatctcctggaaaggacaaaaccagtgaaagcactaaactacctcctcctcagaag
aaagaagagctgccgaaagcagagaagcgcaaatcacaaactcctaaaactgtacagagt
aaaaaggttaggaaacaacatatagagaaatgtatccagtag

All links

Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (4)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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