KEGG T01011: 549735

Xenopus tropicalis (western clawed frog): 549735

Entry

549735 CDS T01011

Gene name

lig4

Definition

ligase IV, DNA, ATP-dependent (EC:6.5.1.1)

Orthology

K10777

DNA ligase 4 [EC:6.5.1.1]

Organism

xtr Xenopus tropicalis (western clawed frog)

Pathway

xtr03450

Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:xtr03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

Xenbase:

UniProt:

Position

AA seq 911 aa
MSATKASDSAAERTVASQVPFADLCCTLEKVQKCKNRTEKSHIFKQFVDSWRKFHEALHK
SQPKTTDSFYPAMRLVVPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDAIKLLNYRSP
TSSHSDAGDFAAIAYFVLKSRCRKEGSLSIQEVNYHLDSIANNNAAKKKELIEKSLLHLI
ANTTALEQKWLIRMIIKDMKLGFSQQTVFSIFHPDAAELHNVTTDLEKVCIQLHDPNVCL
SDVSISMFSAFKPMLAAIANIQNIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPYIHNAFSLNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSELQTCYCVFDVLLLNDQKLAHETLRKRYDILQEIFIPIPGRFHIVDKTEASTKKNVV
DALNEAIDKREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLIIIGGYWGKGS
RGGMMSHFLCGVAEASGPGEKPSVFHSICRVGSGYTMKELFDLGLKLAPHWKTYRKRDPP
SNILCGIEKPEAYIQPCNSVIVQIKAAEIVTSDMYKTGCTLRFPRIEKIREDKEWYDCMT
LDDLEQFRDKASGKLASKHLHIDDEPHEKKRKTAPKLKKVIGIVSHLKAPDLSNVYQESS
VFAEVEFCVMSGTDTHSKDDLANIIAKCGGIGVQNPGADTYCVIAGTENVRVKNIICSNK
HDVVKAAWLLECFESKTFVPWQPHHMIHMCPSTAEHFACEYDCYGDSYITDTSEYQLREV
FHRMSNIREKIPFEMMADLEERYSWNNSSHSFFRHCTVYVDSFATINDPTTRINTSSLNL
RALELRFYGAKLVNQLEEGISHVVVGEDLSRLEQMKTMRRAIAKKFKIVSVSWVLDSVKM
RVPQMENSYLL

NT seq 2736 nt +upstreamnt +downstreamnt
atgtctgcaacaaaagcctccgattctgcagccgaacgtactgtggcctcacaagttcct
tttgctgatctctgctgcactcttgaaaaagttcaaaaatgcaaaaacagaactgagaaa
agtcacatttttaaacaattcgttgattcatggagaaaatttcatgaagcccttcataaa
agtcagccaaaaacaacagattctttctatccagccatgcggcttgtagttccacaactt
gaaagagagagaatggcttatggaatcaaagaaactatgcttgctaaattgtacattaag
gttttaggcttgccaaaagaaggcaaagatgcaataaaacttttgaattatagatcgcca
actagttcacatagtgatgcaggggattttgcagccattgcttattttgttctcaagtca
agatgcagaaaagagggtagcttgtcaatacaagaagtaaattaccatttagattcaatt
gctaataataatgcagcaaaaaagaaggaactcatagaaaaaagtttgctgcatttgatt
gctaacacgactgctcttgaacaaaagtggctcatcagaatgattattaaggacatgaaa
ctgggttttagccagcaaacagttttctccatcttccatcccgacgcagcagagctgcat
aatgttactaccgatcttgagaaagtttgtattcagctgcatgatcctaatgtgtgtctc
agtgatgtttccatatcaatgttctctgcttttaaaccaatgctggctgccattgccaat
attcagaatattgaaaagcaaatgaaccaccagagtttttacattgaaacaaaacttgat
ggagaacgaatgcagatgcacaaagatggggacgtatataaatatttctcacggaatgga
tttgattacacacagcagttcggtgcatctcctcttgaaggttctttgacgccatatatt
cacaatgcttttagtctgaacatacaaaattgcattctagatggagaaatgatggcatac
aatccaaatactcagactttcatgcaaaaaggaaataagtttgatattaaacgcatggtg
gatgattctgagttgcaaacttgttactgtgtttttgatgttctgttgcttaatgatcaa
aaattggcacatgaaactctcagaaaaagatatgacattctgcaagagatttttatccca
attccaggcagattccatattgttgataaaacagaagcaagcacaaaaaagaatgttgtg
gatgcacttaatgaagcaattgataaaagggaagaaggcattatggttaaagatccaatg
tctatctacaaaccagacaaacgtggggaaggatggctgaagattaagcctgaatatgta
aatggcttaatggatgagctagacctaatcatcattggaggctactggggaaaaggttcc
cgtggtggaatgatgtcccatttcttatgtggtgttgccgaagcatcaggtcctggggaa
aaaccatctgtttttcactcaatttgccgtgttggctctggttataccatgaaagaatta
tttgatcttggtttaaagttggctcctcactggaaaacatatcggaaaagagacccaccc
agcaatattctttgtggaatagaaaaacctgaagcatatattcaaccttgtaattctgtt
attgtgcaaattaaagcagcagaaattgttaccagtgatatgtacaaaactggttgcact
cttagattccctcgtattgaaaaaataagggaagataaggaatggtatgactgtatgaca
cttgatgacttggaacagtttagagacaaagcatctgggaaactggcttctaaacactta
catattgatgatgaaccacatgaaaagaaacgtaaaactgcaccaaagcttaagaaagtg
attggaattgtttcacatctaaaagcacctgacctcagtaatgtatatcaggagtcctct
gtgtttgcagaagtggagttctgtgttatgagtggaacagatacgcattctaaagatgat
ctagcgaacattattgctaaatgtggaggtattggggtacagaatcctggggcagataca
tactgtgttattgcaggaacagagaatgtgagagtgaaaaacattatctgctcaaataaa
catgacgttgttaaagcagcatggctattggagtgttttgaaagtaaaacctttgtgcca
tggcagcctcaccacatgatacacatgtgtccatcgactgcagaacattttgcttgcgaa
tatgactgctatggcgatagctatatcacagatacaagcgaatatcaattgagagaggtc
tttcacagaatgtctaacataagagagaaaattccctttgaaatgatggctgatttagaa
gagaggtactcatggaataactcttctcatagtttctttcgtcattgcacggtatatgtc
gatagttttgccacaattaatgacccaactacaagaataaatacatccagcctaaatcta
agagcactggaactacgtttttatggtgcaaaattagtaaatcagcttgaagaaggaatt
tcacatgttgtagttggtgaagacttgtcccgtctggagcaaatgaaaactatgaggagg
gccattgcaaaaaaatttaaaattgtgtctgtttcgtgggtacttgattcagtaaaaatg
agagtgcctcaaatggaaaattcatatttgctataa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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