KEGG T01011: 733546

Xenopus tropicalis (western clawed frog): 733546

Entry

733546 CDS T01011

Gene name

thoc1

Definition

THO complex 1 protein

Orthology

K12878

THO complex subunit 1

Organism

xtr Xenopus tropicalis (western clawed frog)

Pathway

xtr03013	RNA transport
xtr03040	Spliceosome

Module

xtr_M00405	THC complex
xtr_M00406	TREX complex

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:xtr03040]
Genetic Information Processing; Translation; RNA transport [PATH:xtr03013]

SSDB

Motif

Pfam:

efThoc1 Death

Other DBs

NCBI-GI:

301609229

NCBI-GeneID:

733546

Xenbase:

XB-GENE-951669

Position

AA seq 671 aa
MASSYSDGGVPNGSNMSPLSFCLTEAKDKFTVATREAVGCKNIKPLLNIFTQLPGSENEK
KPTLDQVFRVVLEEEIINQVSCENCLAIISLAINGVTDGICTATTPFVLLGDVLDCLPLA
YCDKIFTFVEKNVGTWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLF
PLSEKSGLNLQSQFNLENVTVFNANEQESTLGQKVEEKDDGMEIEEGEMGDDDAPNSSSI
PIDYNLYRKFWTLQDFFRNPVQCYDKNSWKTFLKFSDEVLTVFKSYKLDDTQASRKKIEE
LKSGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSNYILLDE
QSLWIEDTTKLVHQLLSETPPVGEKFSKTVEHILNTEENWNAWKNEGCPSFVKERPTETK
PQKMAKKRPLPEEFLGKGSNKKMSMGNDELTRLWNLCPDNMEACRSESREFMPSLEQFFE
EAIEQADPENMVDNEYKVVNNANYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIK
LAKELPPPSEEIKTVDEDEDEDNESLLKENNESPAEVQQQKLSMSEQIESFANKLGEHWK
TLAPHLDMKEMDIKVIESDTEDAKMRAKLLLLAWQEREGGHANLENLISALNSAGLNELA
ESITNDSENGS

NT seq 2016 nt +upstreamnt +downstreamnt
atggcgtcatcatacagcgacggcggtgttccgaacgggagcaatatgtcgccgttgtca
ttttgtttgactgaagcaaaagataaattcacggttgccaccagagaagcagtgggatgc
aagaacatcaaacccttgctgaacatatttacccagctgcctggaagtgaaaatgaaaag
aaaccgacgcttgatcaagtattcagagttgttcttgaggaggaaattataaaccaagta
tcatgtgaaaactgtctagctattatatcactggccataaatggggttacagatggtatt
tgcactgcaacgacaccatttgtgctcttgggagatgtgcttgactgtctgcctctagcg
tactgcgacaagatcttcacttttgttgagaaaaatgttggtacctggaaatctaataca
ttttactcagcggggaaaaactacctgctacggatgtgtaatgatctcttaagaagacta
tcaaaatctcagaacacagttttctgtggaaggattcaactatttcttgcacgactcttc
cctctctctgaaaaatctggcttgaacttgcagtcacagtttaatttggagaatgtcact
gtatttaatgccaatgagcaggaaagcacattgggacagaaggtggaagaaaaagatgac
gggatggagattgaagaaggggaaatgggagatgatgatgcacctaatagttcatctatc
cccatagactacaacctgtataggaagttctggacacttcaagacttcttcaggaatcct
gtgcagtgttacgacaagaactcctggaaaacctttctcaaattttcagatgaagttctt
actgtatttaaaagttataagctggatgatactcaggcatcaaggaaaaagatcgaagag
ctaaaatctggaggagaacatgtgtattttgccaaatttttgaccagtgaaaagttaatg
gatctgcagctgagtgacagcaacttccgtcgccatatattggttcagtaccttattctg
tttcagtatctaaagggacaagtcaaatttaaaagttccaattatattcttctagatgaa
cagtctctttggattgaggacaccaccaagcttgtccatcagctgctttctgaaacacct
ccagttggggaaaagttttctaaaacagtggagcatatactgaatactgaagaaaactgg
aacgcatggaaaaacgaaggctgtccaagttttgtaaaggaaagaccaacagaaacaaag
ccacagaaaatggcaaaaaaacggccattaccggaggagtttctaggaaaaggttcaaat
aagaaaatgtccatgggaaatgatgagttaactcggctttggaatctgtgccctgacaac
atggaagcatgcagatctgaaagcagggagtttatgccatctttggaacagttctttgaa
gaggccattgaacaagctgatcctgaaaatatggtggacaatgagtataaggtggtgaat
aatgccaattatggctggagggcacttagactgttggcacgccgaagcccccatttcttt
caacctaccaaccagcagtttaaaagcttaccagaatacctggagaatatggtgatcaag
ctagctaaagaattgcctccaccatcagaagaaataaaaactgttgatgaagacgaagat
gaggacaatgaatctttgttaaaggagaacaatgaaagtccagccgaagtacaacaacaa
aaactgagcatgagtgagcagattgagtcattcgctaacaaactgggcgagcactggaag
acactcgccccccatctggatatgaaggagatggacattaaagtgatagaatctgacact
gaggatgcaaaaatgagagcgaagctcctgcttctcgcttggcaagagcgagagggaggc
catgcaaacttggagaatctaataagtgcactgaatagcgccggcttaaatgaactggca
gaaagcataaccaatgactctgaaaatggttcctga

All links

Pathway (4)   
   KEGG PATHWAY (2)   
   KEGG MODULE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

Download RDF

DBGET integrated database retrieval system