KEGG T01011: 779516

Xenopus tropicalis (western clawed frog): 779516

Entry

779516 CDS T01011

Gene name

pex1

Definition

peroxisomal biogenesis factor 1

Orthology

K13338

peroxin-1

Organism

xtr Xenopus tropicalis (western clawed frog)

Pathway

xtr04146

Peroxisome

Class

Cellular Processes; Transport and catabolism; Peroxisome [PATH:xtr04146]

SSDB

Motif

Pfam:

AAA PEX-2N PEX-1N AAA_16 AAA_17 AAA_14 AAA_22 AAA_2 Sigma54_activ_2 RNA_helicase AAA_5 AAA_33 RuvB_N AAA_18 IstB_IS21 ABC_tran DUF815 AAA_19 TIP49 Zeta_toxin Sigma54_activat Mg_chelatase NACHT AAA_28 AAA_29 AAA_25 FtsK_SpoIIIE AAA_24 T2SE MobB DUF258 Miro Parvo_NS1 KaiC Rad17 AAA_23 KTI12 AAA_10 MMR_HSR1 APS_kinase

Other DBs

NCBI-GI:

301610192

NCBI-GeneID:

779516

Xenbase:

XB-GENE-985415

Position

AA seq 1205 aa
MLGPGPPGAAVSLKLTSAKDTFLRVTPEVLAQLRLEQKHAVEVSWSDQEPVYLCWMERRS
GTCSRTNVAELNRQFGEILGFSDGQQVFLKQCTNVISCKEVTVEPLTADDWDILELHSSA
LESRLLDQIRIVYPKAIFPVWVDPHTCIYLQIGALTPQSSYGRLEPLTELIVAPKQRNLE
TISPAFIPPGPEDLDVNFSHEKSDHKQSRTADSQRQSTEGESGPTESDHSDSLSSSKSIW
DTVGDFLLRSLGRKPALSLGSSETELIKKSLVKKVELEAVFRVSSRIPHIVKSSQEYNDY
ANDNCVHVFLWYPEPPGLVPDIVVTFGTIQELLSPKRRKESTRKNTEPSEKKPDGIAPGS
PKQRNSDTKGHSATVKIVWHGFDDLKDVIEYDTRNGNTHVGKVWVPSQLRKKLNINISSA
VRIHSHDSVLRLPTSLTLQPAQTLDRNIHEDEIKAAFSTWLQSNSTLKMPWIAGNTGYIQ
IILKDEVSDFFIILDKLDLQSSQDDFYMLCPSIMEKTKIHVNFEPAPSEESHRHLHADQN
LLYLKLQNLGYVLLIGKSCYDHVVHCLLGRPLSRQLVASASGLRSGGVLLCGPKGSGKST
LAKALCKEASEQLEAHVEEIDCKLLKGKNVENIIQTLEEAFEEAAWRQPSVILLDDLDQI
AGVASSPELEQSPEATQSKQLAYVLKDLMKNIISMDTLVSLIATCQSEHSLNPVLISEQG
THLFQCVKPIPPPTQENRSEMLRCVIENRLSGDTAFYRDLDFQYLARETEGFVARDFTML
VERAIESSVSKRQICRIEDLVLSTTDFQRALKGFTPLSLRNAQLHKPKKQDWNMVGGLHD
IRQVLKDTIELPAKYPELFANLPIRHRSGVLLYGAPGTGKTLLAGVIAHESRMNFISIKG
PELLSKYIGASEQAVRDVFTRAQAAKPCILFFDEFDSIAPRRGHDNTGVTDRVVNQMLTQ
LDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDECLYCPPPDQDSRFEILKGLSHSMLLD
ENVDLKHIASLTDYFTGADLKALLYNAQLEAIHTNLSVTVPQDNNSGSDSDMSLSSIIFL
NHSSASDDSGGDQDSVLDHSLPSLDMIKLPIEDIHSSMWRLYFGNSYDSDLGNGSSEQVY
DSHSQMESKKSLLIKQHHLLNALASTRPSISQEDWKFFNHLYENFKNPKQSSRETWRSGQ
KVTLA

NT seq 3618 nt +upstreamnt +downstreamnt
atgctaggtccgggaccgcccggggctgctgtgtccctgaaactcacaagtgctaaggac
acatttttgcgtgtgacacctgaggtgctcgcacaattacgcctggagcagaaacatgca
gtggaggtgtcatggagcgatcaggagccagtgtatctatgctggatggagagaaggagt
ggcacttgctcacgtacaaatgtggctgaactgaacagacagtttggtgagatccttgga
ttttcagatgggcagcaggtctttctcaagcagtgcactaatgtcatttcttgtaaggag
gtcactgtcgagcccctgactgctgatgactgggacatactggaacttcattcttcagcc
cttgaatcccgtcttttggatcaaattcgaatagtttatcctaaggctatatttccagta
tgggttgacccacatacttgcatttaccttcagattggtgcactgacgccacagtctagt
tatggcagactggaaccacttacggagttaattgttgctccaaaacagcgaaacttagaa
accatttccccagcatttatacctccaggacctgaggatttggatgttaatttcagccat
gaaaaaagtgatcacaaacaaagcagaactgcagacagtcaaaggcaatcaactgaagga
gaaagtggacctacagagtcagaccattctgatagtttatccagtagcaaaagtatttgg
gacacagtaggagattttcttttacggtctctggggaggaaaccagccctctctttaggt
agcagtgaaacagaactaattaagaagtctttggttaaaaaagttgagttagaagctgtt
tttagggtatccagtcgcatccctcacattgttaaaagcagccaggaatataatgactat
gccaacgataactgtgttcatgttttcttatggtaccctgagcctcctggtttagtacct
gatattgttgtaacatttggaacaattcaggaacttttatcaccaaaaagaagaaaagaa
agtacaagaaaaaacactgagccatcagaaaaaaaaccagatggtattgctccgggaagc
ccaaaacagaggaattctgacaccaaaggacacagtgcaacagtgaagatagtatggcat
ggctttgatgatctcaaagatgtaatcgagtatgatactaggaatggaaacacacacgtt
ggaaaagtctgggtcccatctcagttgagaaagaaactcaatatcaatatttcctcagct
gtaagaatacactcacatgattcagttctcaggctcccaacttcactcacactacagcca
gcgcagactttggatagaaacatacatgaagatgaaatcaaagctgcattcagtacttgg
ctgcagtctaatagtaccttaaagatgccttggattgcagggaacactggttatatacag
attattttaaaggatgaagtatcggatttcttcattattttggataaattagaccttcaa
tcaagccaagatgatttttatatgttatgcccaagcattatggagaaaactaaaattcat
gtgaattttgagccggccccctctgaagagtctcatagacacctacatgcagatcaaaat
cttctttacttgaaactgcaaaatttagggtatgtgctactaatagggaaatcatgctat
gatcatgttgttcattgtctcctgggccggccactctccagacagctggttgcatctgct
tctggtcttcgtagcggaggagttcttctttgtggacctaagggaagcggaaaatcaact
ttagcaaaagccttatgtaaagaagcatctgagcaactggaagcacatgtagaagaaatt
gattgtaaactattaaaagggaaaaacgttgaaaatattattcagacactagaagaagct
tttgaagaagccgcctggagacagccttcagttatacttttagatgatctggatcaaatt
gctggtgttgcttcttcccctgaactggagcagagtcctgaagcaactcaaagcaaacaa
cttgcatatgttttgaaagatttaatgaagaatataatttccatggacactctggtgtct
ctaatagctacatgtcaatctgaacattctctgaatcctgtgctaatttctgagcaaggg
acacatcttttccagtgtgtgaaacccatcccaccaccaacacaggaaaacagatctgag
atgctacgctgtgtgatagagaaccggctaagtggtgatactgctttctatagagacctt
gacttccagtatcttgcaagagaaacagaaggctttgtggcaagagactttaccatgctt
gttgaacgagccatagagtctagtgtgtcaaagcgacagatatgcaggatagaagatttg
gttttgtcaacgactgacttccaaagagctctaaaaggctttactccattgtccttaaga
aatgctcagctgcataagccaaagaaacaggactggaacatggtgggaggtttacatgat
attcgccaggttcttaaagacaccattgagttaccagccaagtatcctgagctatttgca
aaccttcccatacgccacagatctggagtgttgctgtacggtgcacccggaacagggaag
acgctgctggctggtgttattgctcatgaaagtagaatgaatttcatcagcattaagggc
ccagagcttctcagtaaatacatcggggcaagtgaacaagcggtgcgggatgtctttacc
agagcccaggctgctaagccttgtattctattctttgatgagtttgattccattgctcct
cggagaggccatgataacactggtgtaactgacagagtggtcaaccagatgctgacacag
cttgatggtgtggaaggattacaaggagtgtatgttttggcagccactagtcgccctgac
ttgattgatcctgcgctactcagacctggacgtttggatgaatgcctatattgcccccca
ccagaccaggactcacgatttgaaatcttaaaaggcctcagccattccatgcttttagat
gaaaatgtggacttgaagcatattgcctctctgacggattacttcacaggagcggatctt
aaagccttgctgtataacgctcagctggaggcaattcatactaacctgtcggtaaccgtt
cctcaggacaacaattctggatctgacagtgatatgagcttgtcttccataatattcctg
aaccacagcagtgcttctgatgactcgggaggagaccaagatagtgttctagatcactct
ttaccctccttggatatgataaagcttcccatcgaagacattcattccagcatgtggcgt
ctttactttggaaattcatatgattcagaccttggaaacggcagttcagaacaggtctat
gactcccacagccaaatggagtccaagaagagccttctgattaagcagcatcaccttctc
aatgcgcttgccagcacaaggccatccattagccaagaggactggaagttttttaaccac
ctttacgaaaactttaaaaacccaaagcagtcgagcagagaaacttggagaagtggacaa
aaagtgacccttgcctaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (40)   
   Pfam (40)   
All databases (55)   

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