KEGG T01011: 780106

Xenopus tropicalis (western clawed frog): 780106

Entry

780106 CDS T01011

Gene name

setd1b

Definition

SET domain containing 1B (EC:2.1.1.43)

Orthology

K11422

histone-lysine N-methyltransferase SETD1 [EC:2.1.1.43]

Organism

xtr Xenopus tropicalis (western clawed frog)

Pathway

xtr00310

Lysine degradation

Class

Metabolism; Amino acid metabolism; Lysine degradation [PATH:xtr00310]

SSDB

Motif

Pfam:

N-SET SET RRM_1 RRM_6 RRM_5

Other DBs

NCBI-GI:

NCBI-GeneID:

Xenbase:

UniProt:

Position

AA seq 1956 aa
MSFKEAKPGERGKNPEDHGRKQTASWINGMEAGNQPSTSGEKKSHHWRSYKLIIDPALRK
GQHKLYRYDGLSFSMPNSGVPPVDSVRDPRIGRIWTKTKELDLPVPKLKIDEFYVGPVPP
KQVTFAKLNDNIRENFLGDMCKKYGEVEEVEILYNPKNKKHLGIAKVIFASVKGARDAVK
HLHNTSVMGNIIHVELDTKGETRMRFYDLLVNGFYTPQTLPVGSDLDASPTVNETPQVVE
SVKRTKETAIGPSVTPNSSTPFSHDTAYSSSRQGTPNSYSQFTPQSQGTPHTPRLGTPFS
QDSSYSSRQTTPAFHYGQDSGFKPRRHENKFTDAYNRRPGHHYVHSSGSYRGTEHTFNVT
RPQPEPVQVPRTPPLSHSSGNYKSAFSPYQGNTVFPQTDESQYPQTSRDMEYRRTGPQTS
DSYSDAGCNSASLELKPVKEKPEEPPPPEPDSTTEQKASFSQTPERCETPGTPTLEAELQ
HNSLDTRIAMLLKEQRTQLHLIAGDQNSDNEIRMEGSPISSSSSQLSPIPPYSSGSRYQD
VTPSSRPSSTGLEDISPTPLPDSDDDDEPIPGTASLCQNSRSASPIDQINQSGRKTESLD
KKELVAGDETPTSEKMDEGHPSSGEDMEISDDEVTPSPITSAECAITSSSVISSVIPIPP
PGFPPLPPPPPPQPGFPMPPPLPPPPPPTHPSVTVPPPPLPAPPGVPPHHILHHPPPYHH
FPVMQGEMMNVLGNHWGGMTMSFQMQTQMLSRMMQGQGSYPYHHFMGGSMQFGNQHPYRP
FAISAHLTRGQPWPPFPKFDPSVPPPGYEHKKEDPHKATVDGVLQVIVKELKAIMKRDLN
RKMVEVVAFRAFDEWWDKKERLAKQSLTPVKSGESKEEDKQKTKEHITSSLLESWNKGEG
LGFEGIGLGIGLRGAIRLPSFKVKRKEPPDAALAGDQKRIRPSHSVDDEDEESERDRDIS
STASDLSKKDADAVNNRRRPARPLDSEGEEEVESEGDDGETSDKEDSSSEKEDQDDGSVS
ALSSKKQLYGDKEGDDEDDDTQSSGKEEDLVSEEEDTTSVASSRAEMDSSDESEESSEYE
SSSDSDEKEEEDDEEEELVFGDDQSEDQDLGQEYEVETDREEDFFRENLSECSSLPKAGD
VELEDEMQKVEEDVARQTTQETLHLRKKNLDVPLVESKECKQDTLDKVEKLFAVPMQEEV
FKEHEKAPSPMNEEEEYIELQLEPVPLVPEGAAPAAQEPVIIRPLTPTGAFGETGPVLKL
EEPKLQVNLTQFATEDEELYPRTPGRDTAAHSDTEVTFQPGLKVAPSSLPFLPSHNKEEE
CLLPPEKHAGHLTVTKMLSEEDLPRTPGRDIVVKSSHLGKSQSTETVPATPGSDAPLTGS
SLTLTSPHIPGSPFSYLSQSPGIINSGIPRTPGRDFNFTPTFPESNSIFPCHPSGKKPSV
DEPDEKSFKEPTSASLTMNSVPSPIPFASPPRGLPHMDIRLGADDLESSDTPAYLSDKLL
SEESECEFTKVHLTSTDESAPSPPLPPAEKRKGDRSKKPLSAHEFETEKNYETSSAVAMS
EGALGKQMFIGQPDAVSGIKDPAAVPLDFRNDSLSENTVHEPIIQKVPLKELENQWNEVL
KEEEDITKHKKSRNSRHNNRYDEFSTVPSPEFSPPRAMFKPRSEFEEMTILYDIWNGGID
DEDIKYMCITYDRLLQQDNGMDWLNDTLWVYHPSTSVYSPKKKKRDDGLREHVTGCARSE
GYYKIDKKDKLKYLINNRSLTEELPIDTQGKSIPAQPQASTRAGSERRSEQRRLLSSFTG
SCDSDLLKFNQLKFRKKKLRFCKSHIHDWGLFAMEPIIADEMVIEYVGQNIRQVIADMRE
KRYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHSCNPNCYAKVITVESQKKIVIYSK
QYINVNEEITYDYKFPIEDVKIPCLCGAENCRGTLN

NT seq 5871 nt +upstreamnt +downstreamnt
atgtctttcaaggaggccaagcctggggagagaggcaagaacccagaagaccatggcaga
aagcagactgcaagctggatcaacgggatggaggcaggcaaccagcccagtacttcgggc
gagaagaagagtcaccattggcggagttacaagttgatcattgaccctgctctgaggaag
gggcagcacaaactctatcgttacgatgggctcagctttagcatgcctaactccggggtc
ccccctgtggattcagtaagagatccccggatcggacgtatatggaccaaaactaaagag
ttggatttgcctgtccccaaacttaagatcgatgagttttatgtggggccagtgcccccc
aagcaggtgacgtttgccaaactaaacgataacatccgcgaaaacttcctgggggacatg
tgcaagaaatacggggaggtggaggaggtggagatcctttataaccccaaaaataaaaaa
cacctgggcattgccaaagtcatattcgccagcgtgaagggcgccagggacgcggtgaaa
cacttgcacaacacctcggtcatgggcaacatcattcacgttgagctggacacgaaaggg
gaaacgcgtatgcgcttctatgaccttttggttaatggtttctatactcctcagactctt
ccagttggaagtgatttggatgcctctcccactgtgaatgaaacaccacaggttgtcgag
tcagtgaaacgtaccaaggagactgccattggtccatcagttaccccaaatagcagtact
ccattttcccatgatacagcctattcaagctctcgacaaggtacacctaattcttacagc
cagtttacaccacagtcgcaagggactcctcatactccccgcttgggaacccctttctcg
caggattccagttattccagtcggcaaacaacaccagcttttcattatggacaagactct
ggttttaaaccaaggagacatgaaaataagtttacggacgcttacaatagaagaccaggc
caccactatgtacacagttctggatcctaccgggggactgaacacacatttaatgtgacc
agacctcaaccagaacctgtgcaggttccccgcacaccacctttgagtcattctagcggg
aattataaatccgcattttcaccttatcaaggaaatactgttttccctcaaacagatgag
agccagtatcctcagacatcaagggatatggagtacagaaggacagggcctcagacgtca
gactcctattctgacgcagggtgtaactctgccagtttagaactgaaaccagtaaaggag
aaaccagaggaaccaccacctccggaacctgactcaaccacagagcaaaaagcatcattt
tcccagaccccagagaggtgtgagacacctggaactccaactctggaggctgaactgcag
cacaacagtttggatacacgaattgcaatgctattaaaagagcaaaggacccagctgcat
ttaattgctggtgatcaaaattcagacaatgaaataaggatggagggaagtccaatatca
tcctcctcctctcagctctccccaatccctccttatagttcaggctcccgttaccaggat
gttaccccttcatcacggccctcaagcacaggattagaagatattagtccaacccctttg
ccagattctgatgatgacgatgagccgattcctggcactgcctcactctgtcagaactca
aggtcagcatctcccatagaccagattaatcagtctgggcgaaaaactgagagtttggat
aagaaggaacttgtagcaggtgatgaaaccccaacatctgagaaaatggatgagggtcat
ccttcctcgggagaggacatggagatctcagatgatgaagttaccccttctccaataaca
agtgcagagtgtgccataaccagttcctctgtcatttcctcagtcattcctattccacca
cctgggtttccccctctgccaccgccacctcctccacagcctggatttcccatgccacct
cctttaccccctccaccgcctcctactcatccatcagtaacagtaccaccacctccattg
cctgcaccacctggggtgcctccacatcacatattgcaccatccacctccatatcatcat
ttccctgtgatgcaaggagaaatgatgaatgtccttgggaatcattggggtgggatgaca
atgtccttccaaatgcaaactcaaatgctcagccgcatgatgcaagggcagggttcttac
ccctaccaccatttcatgggaggctccatgcagtttggtaaccagcatccttatcgcccc
tttgctatatctgcacaccttaccagaggacagccctggccaccctttccaaagtttgat
ccatctgtaccaccaccaggctacgagcacaaaaaggaggaccctcacaaagcaacagtg
gatggagtcctgcaagttattgtcaaggaactgaaagctataatgaaaagagatctgaac
cgcaaaatggttgaggtggtggcttttagggcatttgatgaatggtgggataagaaggag
cgtttggcaaagcagtccttaacacctgtgaaatctggggagagcaaagaagaagataaa
caaaagacaaaggagcatataacttccagcctcttggaaagctggaacaaaggggaagga
ttaggttttgagggcattggactgggcattggtctgcgtggtgcaatccgacttccctct
ttcaaggtaaagcggaaagaacctcctgacgcggcactggctggagatcagaagaggatt
cgcccatctcattcagtagatgatgaggatgaagagtctgaaagagatcgagatatctct
agtacagcatctgacttatcaaagaaagatgcagatgcagtaaacaaccgaagaaggcca
gcaagacccttggatagtgaaggggaagaagaggttgaaagtgaaggggatgatggggag
acgtcagataaagaagactcctcttctgagaaagaggaccaagatgatggttctgtgtca
gctttgtccagtaaaaaacagctgtatggggataaagagggtgatgacgaagatgatgat
acacaaagcagtgggaaagaagaggatcttgtttcagaagaagaagataccaccagtgta
gcttcctctagagccgagatggattcttctgatgaaagtgaggaatcttcagagtatgag
tcaagctcggattcagatgaaaaagaggaggaagatgatgaagaagaagaactagtcttt
ggggacgatcaatctgaagatcaagatttaggacaggaatatgaagttgaaactgatagg
gaagaagatttcttcagagagaatttgtctgaatgtagtagtctaccaaaggcaggagat
gtggaattagaagatgaaatgcaaaaagtagaggaagatgttgcacggcaaacaacacaa
gagacattacatctgagaaagaaaaatctggatgtaccactggtggagtctaaagaatgc
aaacaggataccttagataaagtggagaagctctttgcagtacccatgcaagaggaagtt
tttaaggagcatgaaaaagcaccatcaccaatgaatgaagaggaagagtatatagagctt
caattagaacctgtgcctttggttccagaaggtgcagctccagctgcacaagagcctgtg
atcatccgtcccttaacaccaactggtgcttttggtgagactggtcctgttctcaagctt
gaagaacccaaactgcaagttaatttaactcagtttgccacagaagatgaagaactgtac
cctcgcacacctggccgggacacggctgctcattcagatacagaggtcacttttcagcct
ggtttgaaagtagccccatccagcctaccttttttgccaagccacaataaggaagaggag
tgtctgcttccacctgaaaagcatgccggtcatttaacggtgactaagatgctgtcggag
gaagatctgccccgtaccccaggcagagatattgtggttaagtcctcccaccttgggaag
tctcagagtactgagacagttcctgctacgcctggtagtgatgctcccctcacaggtagc
agccttacactgacttccccacacatacctggcagtcctttttcgtatctctcacagtca
ccaggaataattaacagtggtattccacggacacctggaagagattttaacttcactcca
acctttccagaatcaaattcaatattcccttgccacccttctggcaagaaaccctctgtg
gatgaaccagatgaaaagtcattcaaagaaccaaccagtgcttccttaacaatgaacagt
gttccttcacccatcccatttgctagcccgcctagagggcttcctcacatggacataagg
ttaggggcagatgatctggaatcatctgatactccagcatacctttccgataaattatta
agtgaggagagtgaatgtgaatttactaaagtgcacctgacttccactgatgaatctgca
ccatcaccacctctccctcctgcagagaagaggaaaggagacagatccaaaaaacctctt
tctgctcatgaattcgagactgagaaaaactatgaaacttcttctgctgttgccatgtca
gaaggtgctttgggtaaacagatgtttattggacaacctgatgcagtcagtggtattaaa
gatccagcagctgtaccgctagactttaggaatgatagcctctctgaaaacacagttcac
gagcccattattcaaaaagtccctttaaaagagctggaaaatcagtggaatgaagtttta
aaagaggaggaggatataactaaacataaaaaatcaaggaactccaggcataacaataga
tatgatgagttttcaactgtaccttctcccgaattttccccaccccgagctatgtttaaa
cctcgctctgaatttgaggagatgaccattctttatgatatatggaatggaggaatagat
gatgaagatatcaaatacatgtgcattacatatgatagactgttacagcaagataatggc
atggactggctcaatgacacattatgggtctaccacccttcaaccagtgtttattccccc
aagaagaagaagcgagatgatggtttacgggagcatgtaacaggatgtgctcgtagcgag
ggatattataaaattgataagaaagacaaacttaaatacctcatcaacaaccgttctttg
actgaagaacttcccatcgatacccagggaaagagtatcccagctcagcctcaagcctcc
acccgagcgggctcggaaagaaggtcagaacagcgcagactgctctcttccttcactgga
agctgtgacagcgacttgctcaaattcaatcagctgaagttccgaaagaagaagttgcgt
ttctgcaagagccatattcacgactggggtctttttgccatggaaccaattatagctgat
gagatggttattgagtatgtgggacaaaatattagacaggtaattgccgatatgcgggag
aagcgatatgaggatgaaggaatcggcagcagttacatgtttagggtggaccacgacacc
atcattgatgcgactaagtgtgggaattttgcacgatttattaaccacagctgtaatcct
aattgctatgcaaaggttattactgtggagtctcagaagaagattgtgatctactccaaa
cagtatatcaatgtgaatgaagagataacatacgattacaagtttcctatagaagacgtg
aagatcccttgtctttgtggagcagagaactgcagagggacgctaaattag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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