KEGG   Yersinia aleksiciae: ACZ76_04780
Entry
ACZ76_04780       CDS       T03994                                 
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
yak  Yersinia aleksiciae
Pathway
yak03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    ACZ76_04780 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yak03400]
    ACZ76_04780 (recD)
Enzymes [BR:yak01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     ACZ76_04780 (recD)
DNA repair and recombination proteins [BR:yak03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     ACZ76_04780 (recD)
SSDB
Motif
Pfam: RecD_N AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 Helicase_RecD AAA_11 SH3_13 AAA_22 UvrD-helicase SLFN-g3_helicase AAA_16 PhoH nSTAND3 T2SSE UvrD_C CbiA AAA_28 MukB DEAD FtsK_SpoIIIE AAA_14 SRP54 TrwB_AAD_bind AAA Flavi_DEAD ATPase NTPase_1
Other DBs
NCBI-ProteinID: AKP32905
Position
complement(1006065..1007957)
AA seq 630 aa
MMALLNQALGDHLLRPLDLQFSRMIAGDNNPMLQLAAAILSAEAGAGHVCLPLSYLQPDL
LFGGRQSALSQALWQAAGAPDESRWIQALNNSPAVSDGSQPTPLVLQNNRLYLQRMWQYE
GDVVRFIASDSMAAWVNEPRDVNEILLRTTLDRLFGLAGTEVDWQKVAAAVAATRRISVI
SGGPGTGKTTTVAKLLTALIQLSQGQRLRIQLAAPTGKAAARLTESLGNAIRQLVLTDDE
RKLFPDQASTLHRLLGAQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMARLIAALPAK
AQVIFLGDRDQLASVEAGAVLGDICRFAEWGYSELRAEQLARLTGCSLLGVIPIGDVPTD
AVNVRDSLCLLRKSYRFDEKSGIGQLALAVNAGKSNKALSVLSSTYSDIECFSLADSDDY
QVLLEDCAAGYQHYLQLATSGAHAVDVLAAFDRYQLLCALRTGPFGVSGLNERIEQLLHR
KRFIERASGPSGRWYVGRPVMIGLNDSALGLFNGDIGIALYDSEGELRVHFQLPDGNIKS
VQPSRLPSHETAYAMTVHKSQGSEFEHTALILPNTFMPVLTRELVYTAITRARQRLTLYC
SHAVLSHAIRTPTQRRSGLVDRLNELKKKS
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgatggcgttactgaatcaggcgctcggtgaccacttactgcgcccgctggatcttcag
ttttcacgaatgatcgcgggcgacaataacccgatgctgcaattggccgccgctattctc
agtgccgaagcgggggctgggcatgtgtgcttaccattaagctacttgcagcctgacctg
ctatttggtgggcggcagtcggcgttatcacaagcactgtggcaggctgcgggtgcgcca
gatgagtcgcgttggatacaggcactgaataactcccctgcagtgagtgacggctcacaa
ccgacgccgttggttttgcaaaataaccgtttgtatttgcaacgaatgtggcagtacgaa
ggggatgtggttcggtttattgccagcgacagcatggctgcatgggtcaatgaacctcga
gacgtaaacgaaatactattaagaaccacgctagaccgattgttcggcttggcgggtact
gaggttgactggcagaaagtggccgccgccgttgctgcgacccgccgtatttccgtgatt
tctggtggaccgggaacagggaaaaccactacagtcgctaagttattgaccgcactgata
cagctgagtcaggggcaacgtttacgtatccagcttgccgcaccaaccggtaaagcggcc
gcgcgattgaccgagtcattgggtaatgctattcggcaactcgtattaactgatgatgag
cggaagctatttccagatcaggcatccacgctacaccgcttgttaggggcgcaacctaac
agccagcgcttgcgttaccaccgtggcaatccgttaaaccttgatgtgctggtggtcgat
gaggcatcaatggtggatttaccgatgatggcgcggttaattgcagctctgcccgcgaaa
gctcaggttatttttcttggtgatcgtgaccaattggcctcggttgaggccggtgcggta
ttaggtgatatttgtcgttttgctgaatggggttacagcgaattacgggctgaacaatta
gcgcggttaactggatgttcattgctcggagtcattcccattggcgatgtaccaacagat
gccgtcaatgtccgtgatagcttgtgcttactgcgcaaaagctaccgttttgatgaaaaa
tcaggtattggacagctcgctttggccgttaatgccgggaagtctaacaaggcattatca
gttttaagcagcacctattctgacatcgaatgcttctctctggccgattctgatgactat
caggtattgctggaggattgtgccgctggctatcagcattaccttcagttggcgacatcc
ggtgcacatgccgttgatgtgttagcggcatttgatcgctatcagttgctgtgtgcatta
cgtaccgggccatttggggtcagcggcttaaatgagcggattgagcagttgttgcatcgc
aaaaggtttattgagcgagcatctggcccatcagggcgttggtatgttggcagaccagtg
atgattggacttaatgacagtgctctgggtctatttaatggggatattggtatcgcgtta
tatgactcagaaggcgagcttcgggtccatttccaactgcctgatggcaatatcaagtcg
gtgcaacccagccgtcttcccagccatgagaccgcttatgccatgacagtgcataaatct
caaggatcggagtttgagcacacggcattaatattacccaacacctttatgccggtactc
acccgtgaattggtttataccgcgatcacccgtgctcgccagcgattaacactctattgc
agtcatgctgtattgagtcatgcgatacggacacccacgcagcgtcgtagcggattagtt
gatcggttgaatgagttgaagaagaaaagctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (28)   
   Pfam (28)   
All databases (37)   

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