KEGG   Yersinia aldovae: AT01_3868
Entry
AT01_3868         CDS       T03605                                 
Name
(GenBank) hypothetical protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
yal  Yersinia aldovae
Pathway
yal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT01_3868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yal03019]
    AT01_3868
Messenger RNA biogenesis [BR:yal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AT01_3868
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UvrD-helicase AAA_22 Shikimate_DH
Other DBs
NCBI-ProteinID: AJJ64649
Position
4233977..4235335
AA seq 452 aa
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGNGAGRPQSSAGAAAGR
GDSRTSRPRSQADGQRRPAAPSARGRSRKPGE
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggt
taccttgtgccgacgccaattcaacgtcaggcaatccctgtagttctggaaggccgtgat
ttaatggccagtgcacaaaccggtactggtaaaaccgctggtttcaccttgccgctgttg
caactgctgagccaggatcaacagccaatcaaaggccgtcgcccggtacgtgcgttgatt
ttaacgccaacccgcgagctggctgcgcagattgacgaaaacgtacaaagttacagcaaa
tacctgaaattgcgttctctggtggtatttggtggcgttagtattaacccacagatgatg
aaattgcgcggtggcgttgatattttagttgcgaccccaggccgtttactggatctggaa
catcagaacgcggttgatttatccaagatagaaattctggtattggatgaagctgaccgt
atgttggatatgggctttatccacgatatccgtcgtgtgctggcaaaactgcccgccaag
cgccagaatctgctgttctctgccaccttctctgatgagattaaagggctggccagcaaa
ctgctgcacaacccagcgtcggtcgaagtggcgcgccgtaatactgcgtcagagcaaatt
acacaaagcgttcattttgttgataaaaatcgcaaacgtgaattgctgtctcagatgatt
ggtgaaggtaactggcagcaggtgttggtatttaaccgtaccaaacatggcgctaaccat
ttagctgaacaattgaataaagacggtattactgccgccgctattcacggcaacaagagt
cagggcgcgcgtacgcgcgcattggcagatttcaaagacggcaaaattcgtgtgctggtg
gcgactgatattgcagctcgtggcctggatatcgaccagttaccccatgtggttaactat
gagttgccgaacgtaccggaagactatgttcaccgtattggccgtacgggccgtgcggaa
cgtaccggtgaggcgatttcactggtttgcgttgatgaacataaattgctacgtgatatt
gaacgtttactgaagcgtgaaattccacgtatcgcactggatggttacgagccggaccca
agcattaaagctgatccgattcaaaatggccgtcaggggcgtggtgcacaacgccctgga
atgggccgtggtaacggtgcaggccgcccacaaagtagcgcaggcgcagcagcaggccgt
ggtgatagccgcaccagtcgcccgcgtagccaggctgatggtcaacgccgcccggcagca
ccttctgcccgtggtcgtagccgtaaacccggcgaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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