KEGG   Yersinia enterocolitica LC20: LC20_04418
Entry
LC20_04418        CDS       T03179                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
yel  Yersinia enterocolitica LC20
Brite
KEGG Orthology (KO) [BR:yel00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:yel03009]
    LC20_04418
Enzymes [BR:yel01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     LC20_04418
Ribosome biogenesis [BR:yel03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    LC20_04418
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 RrnaAD PCMT MTS Met_10 Methyltransf_11 LELP1 Cons_hypoth95 Methyltransf_23
Other DBs
NCBI-ProteinID: AHM75671
UniProt: A0A7U4GHT4
Position
complement(3824760..3826091)
AA seq 443 aa
MAQFYSANRRVTTKQTLTVTVNSLDPFGQGVARHNGKAIFIPGALPGEQAEIELTEQKRQ
YSRGKLKRLLNRCSERAAPACPHFGICGGCQQQHANSQLQQMSKADSLRRLIIRETGSCP
ELDPVISGPQYGYRRRARFGLLYQPKQQRLQMGFHQNESHDLVSVKHCPVLRPELERLLQ
PLYHCLSALQAVRRLGHVELILADNGPLLVLRHLDTLKEVDRAALTDFAQREQITVYLAG
DSESLEKLIGEEPYYQIEGLRLAFHPRDFIQVNDAVNQQMVAQAIVWLDVQPDERVLDLF
CGMGNFTLPLAKFAREVVGVEGVAALVANGQYNALNNALPNVSFFHENLESDISCQPWAT
QGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRML
DMFPHTGHLESMALFMQEPGVAK
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggcgcaattctactctgcaaaccgacgtgtgacgaccaaacaaacgctaactgtgaca
gtaaactcgcttgacccttttggtcagggggttgcgcgccacaacggcaaagccatcttt
attcctggcgctctgccgggggagcaagctgaaattgagcttactgagcaaaagcgccaa
tatagccgtggtaaacttaaacgtttgttgaaccgatgcagtgaaagagccgctcctgct
tgccctcactttggaatttgtggaggctgtcagcagcaacacgccaatagccagctacaa
cagatgagcaaggcagattcactgcggcgtttgataatccgggagacgggaagttgccct
gagttagacccggttattagtgggccgcaatacggctatcggcggcgggcgagatttggg
ctgctctatcagccaaagcagcagcgattacaaatggggtttcatcaaaacgaatcccat
gatttagtgagtgtaaaacattgcccagttctgcggcctgagttagagcgcttgttacag
ccgctttatcactgtttatcagctttgcaggccgtgcgccgtttggggcatgtggagctg
atattggctgataatgggccgttgctggtgttacgtcaccttgatacccttaaagaggta
gaccgcgcggcgttaactgactttgctcagcgagagcaaataaccgtctatctggccggt
gatagcgagagcttggaaaaacttattggtgaggaaccctattaccaaattgagggtcta
cgcttagcgtttcatccgcgagattttattcaagtcaatgatgccgtcaaccagcaaatg
gtagctcaagctatagtttggttggatgtgcagccggatgagcgagtgctggatctgttc
tgcggtatgggtaattttaccttgccgctagccaagtttgcccgcgaggtggttggtgtg
gaaggagttgcggcgctggtagcgaatgggcagtataatgcactgaataacgcattgccc
aatgtgtccttttttcacgaaaatctggaatctgacatcagttgtcagccgtgggcaaca
caaggattcgataaagtattgttagaccccgcccgcgctggtgctgccggggtgatgtca
cacatagtcaaactggcgccaaagcgggtggtgtatgtttcgtgtaaccccaccacgctg
gcacgagatagtcaggtgttgttagccgccggttaccgtcttgctcaggtgcggatgttg
gatatgtttccccacactgggcatcttgaatctatggcgctgttcatgcaggagccaggg
gtcgcaaagtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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