KEGG   Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE0287
Entry
YE0287            CDS       T00469                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
yen  Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:yen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YE0287 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:yen03021]
    YE0287 (rpoC)
   03400 DNA repair and recombination proteins [BR:yen03400]
    YE0287 (rpoC)
Enzymes [BR:yen01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     YE0287 (rpoC)
Transcription machinery [BR:yen03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     YE0287 (rpoC)
DNA repair and recombination proteins [BR:yen03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      YE0287 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CAL10419
UniProt: A1JII1
Position
334125..338345
AA seq 1406 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESTSRTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq 4221 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcctggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccgactgcgcacatctggttcctgaaatcgttg
ccatcccgcatcggtttgctgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacctggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggcgccgaagctattcaggccttgttgaaaaacatggatctggaagcagagtgcgagatc
ctgcgcgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgact
gtgctgcctgtgctgccgccagatctgcgtccattggttccgttggatggcggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggctgctccggacatcatcgtgcgcaatgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgtggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttattaccgttggcccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccattaaagccgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagttgcacccactggtttgtgcggcatataacgccgac
ttcgacggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagca
cgtgcgttgatgatgtctactaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactggcccgaaagaagctgagcgtatttatcgcgccggc
ctggcatctctgcatgcgcgggtaaaagtccgtattaccgaagaaattcgtaataccgaa
ggcgaaagcacttcgcgtaccagcattatcgatacgactgtaggccgtgctattttgtgg
atgatcgtcccgaaaggcctgccttactctatcgttaaccagccgctgggcaaaaaagct
atctccaagatgctgaacacttgttaccgcatcctgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatccggtctggtaacagcaggcgaacgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgctaaggcgatgatggataac
ttgtctgtagaagatgttgtcaaccgtgacggcgttgttgaacagcaagtgtcattcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcagggatgcgtggtctgatggctaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactctggttatctgacccgtcgttta
gttgacgtggcacaggatctggtcgtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagaagttatcaagccgggtacggctgatattctggttccacgt
aacaccctgttggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgttaccaatgcagcgggcaagctggttattacttctcgtaatacc
gagctgaaactgatcgacgaattcggccgtactaaagaaagctacaaagtgccttacggt
gctgtaatggctaaaggcgatggcgcagaagtccaaggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagcggtttcatccgcttcgcggacatg
attgacggccagaccattacacgccagaccgacgaactgactggtttgtcttctctggtg
gtattggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgccgtctggttatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgatggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcacgcggtaactcgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaattgaggct
acgttcacacgtgacctgctgggtatcaccaaggcatccctggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagaaaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcacagggtgaagcaccagta
gttccgcaagtgagcgcggacgaagcgactgctaacctggctgaattgctcaacgctggt
tttggtaacagcaaagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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