KEGG   Yersinia enterocolitica 2516-87: CH48_1860
Entry
CH48_1860         CDS       T03644                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
yet  Yersinia enterocolitica 2516-87
Pathway
yet03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yet00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH48_1860 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:yet03021]
    CH48_1860 (rho)
   03019 Messenger RNA biogenesis [BR:yet03019]
    CH48_1860 (rho)
Transcription machinery [BR:yet03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CH48_1860 (rho)
Messenger RNA biogenesis [BR:yet03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CH48_1860 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: AJJ27874
Position
2089944..2091203
AA seq 419 aa
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIATSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
NRSGTRKEELLTTTEELQKMWILRRILHPMGEIDAMEFLISKLATAKTNDQFFDNMRRS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaagaacacgccggtttctgatctgataacacttggcgaaaat
atggggctggaaaacctggcccggatgcgtaaacaagatattattttctctatccttaag
cagcacgcgaaaagtggagaagatatcttcggtgacggtgtgttggagatattgcaggat
ggatttggtttcctccgttctgcagacagctcctacctcgccggtcccgacgacatctac
gtatccccaagccaaattcgccgtttcaacctccgtactggtgataccgtcgccggtaag
attcgtccacctaaagaaggtgagcgttactttgccttgttgaaagttaacgaagttaac
tatgacaaaccggaaaatgcccgtaacaaaatcctgttcgaaaacttaaccccattacat
gccaactctcgtctgcgcatggaacgtggtaacggttcgactgaagatttaactgctcgc
gtccttgatttggcatcgccaatcggtcgtggccagcgtgggctgattgttgctccgcca
aaagcgggtaaaaccatgctgttgcagaatattgcgaccagcattgcttacaatcaccct
gattgcgtattaatggtcttgttgattgacgagcgcccggaagaagtgaccgagatgcaa
cgtctggttaaaggtgaagtgattgcttccactttcgacgagccagcatctcgccacgtt
caagttgctgaaatggttatcgagaaagctaaacgtctggttgagcataaaaaagacgtt
atcatcttactggattcgattactcgtttggcccgcgcatacaacaccgtggtacctgct
tcaggtaaagtgctgaccggtggtgtggatgctaacgccttgcatcgtccaaaacgcttc
tttggtgccgcacgtaatgttgaagagggcggtagcctgactatcattgccaccgcgttg
gttgataccggttctaaaatggatgaagttatctatgaagaatttaaaggtaccggcaac
atggaactgcacttgtcgcgcaaaattgcagagaagcgtgtgttcccagccattgatttc
aaccgctctggtacacgtaaagaagagctactgacaaccacagaagagttgcaaaaaatg
tggatcttacgtcgtatccttcatccaatgggtgaaatcgatgcaatggagttcctcatc
agcaaattggcaacagcgaaaaccaacgatcagttcttcgataacatgagacgttcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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