KEGG   Yersinia enterocolitica WA: CH47_3095
Entry
CH47_3095         CDS       T03643                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
yew  Yersinia enterocolitica WA
Pathway
yew02024  Quorum sensing
yew03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yew00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH47_3095 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CH47_3095 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yew03019]
    CH47_3095 (hfq)
   03036 Chromosome and associated proteins [BR:yew03036]
    CH47_3095 (hfq)
Messenger RNA biogenesis [BR:yew03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CH47_3095 (hfq)
Chromosome and associated proteins [BR:yew03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CH47_3095 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AJI85134
UniProt: A0A0E1NDG6
Position
complement(3359540..3359845)
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPSGSTNNYHGSNPSAPQQPQQDSDDAE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgggtt
ccggtttctatttatttagtgaatggcattaaactgcagggccaagttgagtcttttgat
cagtttgtcattctgttaaaaaacacagtcagccagatggtttataagcacgccatctct
actgtagtgccttctcgcccggtttcgcatcacagcaataatccgagtggtagcactaat
aattatcatggtagtaatccatctgcgccgcaacagccgcagcaggatagcgatgacgct
gaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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