KEGG   Yersinia intermedia: CH53_3007
Entry
CH53_3007         CDS       T03608                                 
Name
(GenBank) RNA pseudouridylate synthase family protein
  KO
K06177  tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Organism
yin  Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:yin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:yin03009]
    CH53_3007
   03016 Transfer RNA biogenesis [BR:yin03016]
    CH53_3007
Enzymes [BR:yin01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     CH53_3007
    5.4.99.29  23S rRNA pseudouridine746 synthase
     CH53_3007
Ribosome biogenesis [BR:yin03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CH53_3007
Transfer RNA biogenesis [BR:yin03016]
 Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    CH53_3007
SSDB
Motif
Pfam: PseudoU_synth_2
Other DBs
NCBI-ProteinID: AJJ21278
Position
3377698..3378396
AA seq 232 aa
MSTIIDTFIAPPCHDKIEILYQDDHLVLINKPAGLLSLSGKNPQNLDSVHHRLVQIFPGC
TLVHRLDFGTSGLMVIARNKVINAALCQQFSQRTVTKVYSALLCGHLDDNEGVIDAAIAK
DPALFPLMSICSIHGKPARSHYQVVERFYHELEDRTLLPLTRVQLTPETGRTHQLRIHCQ
QLGHPILGCDLYGGRLLPGTERTPRLMLHASELHFNHPIGEEWIKARNTSPF
NT seq 699 nt   +upstreamnt  +downstreamnt
atgtctacgattattgatacctttattgcccctccgtgccatgacaagatagagattctc
tatcaggacgatcacctggtgcttatcaataaacccgcagggctgctcagcctctcgggg
aaaaatccacaaaatctcgattcggtacatcatcggctggtacagatattccccggctgt
accctggtccatcgccttgatttcggtacttccgggctgatggtgattgcccgcaataag
gttattaacgctgccctctgccaacagttcagtcagcgcacagtgaccaaggtgtacagc
gcactgctctgtggacatctggacgacaacgaaggggtgatagacgctgcgattgccaaa
gacccggcgctgttcccgctgatgtctatttgttcaatccacggtaagcccgctcgttcc
cactatcaggttgttgagcgtttttatcatgagttggaagaccgtacgttactgccattg
acgcgggtacagctaaccccggagaccgggcgcacccatcaactacgcattcactgccag
cagttgggccaccctattttgggctgcgacctgtatggcggtcgcctgctgccaggtacc
gaacggactccgcggctgatgctgcacgccagtgagttacattttaatcatcccattggc
gaagagtggatcaaagcccgtaataccagcccgttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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