KEGG   Yersinia intermedia: CH53_3203
Entry
CH53_3203         CDS       T03608                                 
Name
(GenBank) hypothetical protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
yin  Yersinia intermedia
Pathway
yin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yin00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH53_3203
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yin03019]
    CH53_3203
Enzymes [BR:yin01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CH53_3203
Messenger RNA biogenesis [BR:yin03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CH53_3203
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Shikimate_DH UvrD-helicase AAA_22
Other DBs
NCBI-ProteinID: AJJ18178
UniProt: A0A0T9LUL7
Position
3586381..3587736
AA seq 451 aa
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSLDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSSKPGE
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacaccgattcaacgtcaggcaattcctgtggtattggaaggccgtgat
ttaatggccagcgcgcaaaccggtaccggtaaaactgcgggtttcaccttgccgttgttg
caactgcttagtctggatcaacagccaattaaaggccgtcgcccggtacgtgcgttgatc
ttaacgccgacccgtgaactggctgcgcagattgacgaaaacgtacagagttacagtaaa
tatctgaagctacgttcgctggtggtatttggtggcgttagcattaacccacagatgatg
aaattgcgtggtggtgttgatattttggtggcgacgcctggccgtttactggatctggaa
catcagaacgcagtagatttgtccaagattgagattttggtattggacgaagctgaccgc
atgctggatatgggctttattcacgacatccgccgcgtattggcaaaactgcccgctaag
cgccagaacttgctgttctccgccaccttctcagacgagattaaaggtttggcgagcaaa
ttgttgaacaacccagcttctgttgaagtggcgcgtcgcaatactgcttctgagcaaatc
gcgcaaagtgttcattttgtggataaaaaccgcaaacgtgaattattgtctcagatgatt
ggtgaaggcaactggcagcaagtgttggtgtttaaccgcactaagcatggtgctaaccat
ttggctgaacaactgaataaagacggcattaccgcagcggcaattcacggtaataagagc
cagggtgcacgtactcgtgcattggctgattttaaagacggtaaaatccgtgtactggta
gccactgatattgctgcccgtggtctggatattgatcagttaccccatgtggttaactat
gaattacctaacgtaccagaagattacgtgcaccgtatcggccgtactggccgcgcggaa
cgcacaggtgaagcgatttcactggtttgcgttgatgagcataaactgttgcgtgatatt
gagcgtttactgaagcgtgaaattccgcgcatcgcgctggatggctatgagccggatcca
agcatcaaagctgatccgattcaaaatggccgtcagggtcgtggtgcacaacgtccagga
atgggccgtggtagtagcgcgggtcgcccacagaatggcggtggtgctgccggtcgcggc
gatagccgtaacagtcgcccacgtagccaggctgatggtcaacgtcgccctgctggccct
tcttcacgtggtcgtagcagtaaacccggcgaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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