KEGG   Yersinia rochesterensis: CH54_2881
Entry
CH54_2881         CDS       T03609                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ykr  Yersinia rochesterensis
Pathway
ykr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ykr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CH54_2881 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ykr03021]
    CH54_2881 (rpoC)
   03400 DNA repair and recombination proteins [BR:ykr03400]
    CH54_2881 (rpoC)
Enzymes [BR:ykr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CH54_2881 (rpoC)
Transcription machinery [BR:ykr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CH54_2881 (rpoC)
DNA repair and recombination proteins [BR:ykr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CH54_2881 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AJJ37040
Position
3118884..3123104
AA seq 1406 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPDAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQSEAPV
VPQVSADEATANLAELLNAGFGNNKG
NT seq 4221 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcgttcggcgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccaactgcgcacatctggttcctgaaatcgttg
ccatctcgcatcggtttactgctggatatgccattacgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggttattgaaggcggtatgaccaacttggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaagctattcaggccctattgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgttggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtgttgccgccagacctgcgtccattggtgccgttggatggtggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggctgctcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgtggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactctggtcgttcggtaatcaccgtgggtccatac
ctgcgcctgcatcagtgcggtctgccaaagaaaatggctcttgagctgttcaagccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccattaaagctgccaagaagatg
gttgagcgtgaagaagcggttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagttgcatccactggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattaggtctgtattacatgacccgcgactgtgttaacgcc
aaaggcgaaggcatggtactgactggtccgaaagaagctgagcgtatttatcgcgctggt
ctggcatctctgcatgcccgcgtaaaagtgcgtattactgaagaaattcgtaataccgaa
ggcgaaagcattacgcgtactagcatcattgatacgacagtaggccgtgctattttgtgg
atgatcgttccacaaggtctgccttactctatcgtgaaccagccgctgggcaaaaaagct
atctccaagatgctaaacacgtgttaccgcatcctgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagatgcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgaaatccaggagcagttccaatccggtctggtaacggcaggcgaacgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgccaaggcgatgatggataac
ttgtctgttgaagatgttgtcaaccgtgacggcgttgtcgagcagcaagtatccttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gcagggatgcgtggcctgatggctaagccagatggttcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtcgtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgttctg
ggtcgtgtgactgcagaagaagttatcaaaccgggtacggctgatattcttgttccgcgt
aacaccctgctggacgagaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgtaaccaatgcagcgggcaagctggttattacttctcgtaatact
gagctgaagctgatcgacgaattcggccgtactaaagaaagctacaaagtgccttacggt
gcggtaatggctaaaggcgatggcgcagaagtccagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtcaccgaagtgagcggtttcatccgcttcgccgacatg
gttgacggccagaccattacacgccagaccgacgaactgactggtttgtcttctctggta
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggcgacgacgtattgattccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagttggaagacggtattcagattggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaagcgtcgtctggtgatttcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgacggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcacgcagttactcgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagataaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaatcgaggct
acgttcacccgtgacctgctgggtatcaccaaggcatccttggctaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgcggcctgaaagaaaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcacagagtgaagcaccagtg
gttccgcaagtcagcgcggatgaagcgactgctaacctggctgaattgctcaacgccggt
tttggtaacaacaaaggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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