KEGG   Yersinia rochesterensis: CH54_3663
Entry
CH54_3663         CDS       T03609                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
ykr  Yersinia rochesterensis
Pathway
ykr00740  Riboflavin metabolism
ykr01100  Metabolic pathways
ykr01110  Biosynthesis of secondary metabolites
ykr01240  Biosynthesis of cofactors
ykr02024  Quorum sensing
Module
ykr_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:ykr00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    CH54_3663 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CH54_3663 (ribD)
Enzymes [BR:ykr01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     CH54_3663 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     CH54_3663 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: AJJ34772
Position
3993588..3994697
AA seq 369 aa
MQPDEFYMARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMA
GEKARGATAYVTLEPCSHHGRTPPCADALLAAGVKRVVAAMQDPNPQVAGRGLYKLKQAG
VEVDHGLMLAEAEATNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQD
VQRFRAQSSAILSTSATVLADDPSLTMRWQELDAETQALYPQDTLRQPVRVIVDSHNRVT
LEHKVIQQDGPCWLARVEADEQTWPGNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVE
AGPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTRLSDAPEFTFSDVRQVGPD
LRLRLKPKY
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgcagcccgatgagttttatatggcccgtgcctttgagttggcgcggttagggcgtttt
accacgtcacctaacccgaatgtcgggtgtgtggtggtgcgggacggcgagattgttggt
gaaggttatcacctgcgtgccggtgagcctcatgccgaggtgcatgccctgcgtatggca
ggtgagaaagcgcgtggcgctactgcctatgtcacccttgagccgtgcagccaccatggg
cgtacgccaccctgtgctgatgctttgcttgccgccggtgtaaaacgcgtggtagccgcg
atgcaggaccctaatccgcaagttgccgggcgcgggttatataaattgaaacaagccggg
gttgaagttgaccacggtttgatgctggcagaggccgaagccactaatctgggtttcttg
aagcgcatgcgcaccggttttccttatctacaactgaaaatggcagcttccctggatggc
cgtacggcgatggcttcgggtgaaagccagtggattacctcgccgcaggcacgtcaggat
gtgcagcgttttcgggcgcaaagctcggccatcctcagtaccagtgccacagtattggcc
gatgatccttcgctaaccatgcgctggcaggaattagatgctgaaactcaagcgctctat
cctcaagatacgctgcgccagccagttcgagttatcgtcgatagccataaccgcgtgacg
ctagagcacaaggtgatacagcaagatggcccatgctggttagcccgggttgaggcggat
gagcaaacatggcctggcaatgtcgagcaattgttgctgccccgacatggcaatggggtg
gatttagtcttattgatgatgcaattgggtaagcggcaaattaattctgtttgggttgag
gcggggccgcaattcgcgggcgctttgttgcaggccggtgtggttgatgaattaattctt
tatatcgcaccaaaattattaggcagtgatgcccgaggattatgccagttagcagggtta
acccgcctctcagatgccccagagtttacatttagtgatgtgcgccaggtggggccagac
ttgcgtctgcgcttgaaaccgaagtattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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