KEGG   Yarrowia lipolytica: YALI0D15246g
Entry
YALI0D15246g      CDS       T01033                                 
Name
(RefSeq) YALI0D15246p
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
yli  Yarrowia lipolytica
Pathway
yli03440  Homologous recombination
yli03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    YALI0D15246g
   03450 Non-homologous end-joining
    YALI0D15246g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yli03032]
    YALI0D15246g
   03400 DNA repair and recombination proteins [BR:yli03400]
    YALI0D15246g
DNA replication proteins [BR:yli03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    YALI0D15246g
DNA repair and recombination proteins [BR:yli03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     YALI0D15246g
    BRCA1-C complex
     YALI0D15246g
   NHEJ (non-homologous end-joining)
    MRX complex
     YALI0D15246g
SSDB
Motif
Pfam: AAA_23 AAA_21 SMC_N AAA_15 SbcC_Walker_B AAA_29 AAA_13 Golgin_A5 CENP-Q AAA_22 ABC_tran Rad50_zn_hook AAA_16
Other DBs
NCBI-GeneID: 2910752
NCBI-ProteinID: XP_502852
UniProt: Q6C910
Position
D:complement(join(1851150..1855010,1855627..1855644))
AA seq 1292 aa
MSSISKLSIQGIRSFDNTERETITFNKPLTLIVGQNGSGKTTIIECLRYATTGDLPPHSK
GGAFIHDPKICGEKEVLGQVKLAFTNVNGIQMICTRTMQVLVKKNTRQFKTLEGQLMASN
NGERTTVSTRCAELDAQMPLYLGVSKSILDYVIFCHQEESLWPLSEPAVLKKRFDEIFEA
LKFTKALDSIKSLRKEKNVEIKLQTQTTEYLKADKDRADKAAEKANLLLERIEDYKSQAD
ELETKMEMVTKQSDELFQSNQQFQQVLAEVQQLKRDRVVVGEQRERLEKNCTEVLTVSDD
ELQKQVSEFDSRLDDRRETVSGLKQDSEDARKDMEGHRLEYNSAIVEVGQWEAKKQELEN
QINARESLLEEIGKKWNTSDLNELRSDLKSDLERVKKEAEAEEGNQTDKISKLSTALTEK
KGQINHDKASTLSYENEVRRLQDEMDTIPTVEGTIAYEESVIQKLEEKLAGLQGNSQGEE
ARFETEIESCDEQTEVLSKRLEKCNSDLAEFNSKSEKRAEHRMLVSELAKQRGVLRGVED
ALSKQYGEVGVTDEKTYTAKLSSYQNAVEKGQGAVSKSRDSLANLTTRLDILNKESLVKD
ATLSELYETISAVLGEGEDNIDDYESTLENLSNDLEVATQNRESTMFTARYYETAVKLAK
SAQHNCLLCSRKFSDTELTDFLAHVEEKTISLPDTKERADKEYQDIKSDFDNVQGISGEV
REWRNLKESVESVSAQLKKLKQEVVEGQSAFEKEEESLSLLESQLRDLEVLKKAVEDVKR
LKSDVASKEKELTDFEGEFSTLMDFSEESTSDLPSLASSLNSQIKSINQKRQKLVDDREA
LRKQFSSLQGQISDKKLSLSTQKNQLTKKTGLQQQISGLKTKIEECRARIRTVREEIESI
EPKLQSLKNELSEMRVTNGDKMEAISDKLEDVKNDANQLSHMSQQIQQLEELDIASMLTK
TGRRADSAKGEVENLTQRITQLGEDIATQEKALIDLKGHQRNLQDNLEVRRLTNEMSQIE
GRIRELDETKAVRDRDEYQQKSQQLRSQHSAYSSKHAGLLGEMRQMDDQLRNLNVELKSE
FLDVHEKYRKALILLKTTTVANEDLGKYGKALDSAIMQYHSMKMNEINTIIDELWKATYS
GTDIDTILIRSDEDKPGAAKNRSYNYRVVMVKSDAELDMRGRCSAGQKVLAAIIIRLALA
ECFGINCGMIALDEPTTNLDSDNIESLAKGLSNIIDARSSQKNFQLIVITHDEKFLTHMA
ASKHTDHFYRVSRNVRQKSSIEWCPISLIQDS
NT seq 3879 nt   +upstreamnt  +downstreamnt
atgtcttcgatttcgaaactttccattcagggaatccgttctttcgataataccgaacgt
gagaccatcaccttcaacaaaccattgacactcattgttggccaaaatggttctggaaaa
accaccatcatcgaatgtctgcgatacgccactaccggtgaccttcctcctcactccaag
ggaggtgctttcatccacgatccgaaaatttgtggagagaaagaagtgttaggacaagtt
aaactggcattcaccaacgtcaatggcatacaaatgatatgtacgcgaacgatgcaggtt
cttgttaagaaaaatactcgtcaattcaagactttggagggacagctgatggccagtaac
aacggagagcgtactactgtgtcgacacggtgcgcagaactagacgcccagatgccgctc
tatttgggtgtctcgaagagcattctcgattatgtcatcttttgtcatcaggaggagtca
ctctggccgctatccgagccagccgtgttgaagaagcggtttgacgagattttcgaggct
ctcaaattcacaaaggcattggattctatcaaaagtctcagaaaagaaaagaatgtggag
atcaagcttcaaacacaaacgacagagtacctcaaagcagataaggatagggccgataaa
gctgctgagaaggcgaatctgctgctcgagaggattgaggattacaagtcccaggcggac
gagcttgagaccaagatggagatggtgacaaagcagtccgatgagctgtttcagagtaac
cagcagtttcagcaggtgttggcagaagtccagcagctcaagagagatcgagtggtggtt
ggtgaacagagggagaggcttgagaagaactgtaccgaagtgctgacagtttctgatgac
gagttgcagaaacaggtgtctgaattcgactcgcgactagatgaccgacgagagaccgtg
tctggactcaaacaggattccgaagatgctagaaaagacatggagggtcatcgcttagag
tacaactctgccatcgttgaagtgggtcaatgggaggccaagaaacaggagctggagaac
cagattaacgccagagaatctctactcgaggagattggtaagaaatggaacacttcggac
ttgaatgaattgagatctgacctcaaaagtgaccttgaaagggtcaagaaagaagcagaa
gctgaagagggtaatcagaccgacaagatcagcaagctatccactgctttgacggaaaag
aagggacaaatcaaccacgacaaggcttccactctttcctatgaaaatgaggtcaggcgt
ctgcaagatgagatggataccattccgacggtcgaaggaacgatcgcctacgaggaaagc
gtgattcagaaactggaggagaagttggcaggacttcagggtaattcgcaaggggaggag
gcgagatttgaaactgagattgagtcatgcgatgagcagaccgaagtgctcagtaaacgg
ttggagaaatgtaattctgatctagccgagttcaatagcaagtcggagaagcgagctgaa
caccgcatgctggtgtcggagctggctaagcagcggggcgtgttgcggggcgtggaagat
gcgctatccaagcagtatggtgaggtgggcgtcacggacgagaagacttatacagccaag
ctgtcaagttaccagaatgcggtggaaaaggggcagggggctgtatccaagtcacgtgat
tcgctagcaaatctcaccactcgtcttgacatcttaaacaaggaatcacttgtcaaggac
gcaaccctcagtgagctttacgaaaccatttctgctgttctaggcgaaggggaggacaac
attgatgactacgaatcgacgctagagaacctctccaatgacctagaggtcgccacccag
aaccgggaatccacaatgttcaccgcgaggtactatgagactgcagtgaagcttgccaag
tcggctcaacacaactgcttactttgctcgcgtaagttctcggacactgaactgactgat
tttcttgcccacgtggaagagaagactatatctcttcccgataccaaagaacgggctgat
aaagaataccaggatatcaagtccgattttgataacgtccagggtatttccggagaggtg
cgggagtggagaaacttgaaggagagcgtggagagtgtgtctgcacagctcaagaagctc
aaacaggaggtcgttgaaggccaatcggcttttgaaaaggaggaggagtcactgtcgctg
ctggagagtcagctgcgggatttggaggtgctgaagaaggctgttgaagacgtcaagcga
ctaaaaagcgacgtggcttctaaagaaaaggagttgaccgacttcgagggtgaattctcg
accctgatggacttctctgaagaatcaacctctgatctaccttctttggcttcctctttg
aactcgcaaatcaagagtatcaaccagaagcgtcaaaagttggtagatgatagagaggcc
ttgagaaagcagttctcctcccttcaaggccagatatcggacaaaaagttgagtctcagt
acccagaagaaccagctaaccaagaagacagggcttcagcaacaaatttcgggtctgaag
acgaagattgaagaatgtcgagctcgaatcagaacagtccgagaggagattgaatcgatt
gagcctaaacttcagtcactgaagaacgaattgtctgaaatgagggtgactaacggagac
aagatggaggctatttccgacaagctggaggatgtcaagaatgacgccaatcaactgagc
catatgagccagcagatccagcagctggaggagttggacattgcgagtatgctgacaaag
actggaagacgagcagattcagccaagggcgaggtcgagaacctgactcagcgcatcact
cagctgggcgaagacattgccactcaagagaaggccttaattgacttgaagggacatcaa
cgtaatctgcaggacaacttggaggttcgccgactaactaacgagatgagtcagattgag
gggcgtattcgcgaattggacgaaacaaaggctgtccgggatcgagacgaataccaacaa
aagtcccaacagttgcgatcacagcactctgcctattcatctaaacacgctggcctgctt
ggagaaatgaggcagatggatgaccagctgagaaatctcaatgtggagttgaaatctgag
ttcttggatgtccacgagaagtacagaaaggcgttgattcttctgaaaaccaccacagtt
gccaacgaggatcttggaaaatacggaaaagcacttgactccgccatcatgcagtaccac
tctatgaagatgaacgagatcaacacgatcattgatgagctgtggaaagccacgtattcc
ggaacagatatcgacacgattttgattcgatcagatgaggacaagcctggagctgcgaag
aacaggtcctacaactatcgagtagttatggtcaagagcgacgcggaactcgatatgaga
gggcgttgttcggcaggtcagaaggtgctggctgccattatcattcgacttgcgctggcc
gagtgttttggaatcaattgtggaatgattgctctcgatgaacctacaaccaaccttgac
agtgacaacatcgagtcgcttgctaagggtctcagtaacattattgatgctcgaagcagt
cagaagaacttccagctgattgtaattacccatgacgaaaagttcctgacccacatggca
gctagcaaacacactgatcatttttacagagtgagcagaaacgtcagacagaagagcagc
atcgagtggtgtcccattagtttgatccaggactcataa

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