KEGG T00063: YPO0041

Yersinia pestis CO92 (biovar Orientalis): YPO0041

Entry

YPO0041 CDS T00063

Gene name

ligB

Definition

NAD-dependent DNA ligase LigB (EC:6.5.1.2)

Orthology

K01972

DNA ligase (NAD+) [EC:6.5.1.2]

Organism

ype Yersinia pestis CO92 (biovar Orientalis)

Pathway

ype03030	DNA replication
ype03410	Base excision repair
ype03420	Nucleotide excision repair
ype03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:ype03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:ype03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ype03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ype03430]

SSDB

Motif

Pfam:

DNA_ligase_aden DNA_ligase_OB DUF3701 HHH_2 HHH HHH_5

Other DBs

NCBI-GI:

218927262

NCBI-GeneID:

1172891

UniProt:

Q7CLB2

Position

53787..55490

AA seq 567 aa
MNILNLKIIMFLLISNTIVVGGAWATSTCPDWPATRIAVEINALEQQLNKWSAAYHQQGH
SPVTDDIYDQLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHPVAHTGLKKLKDETALTRW
MAGRKNLWVQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAP
ALLTLQGELFLLMDGHQQAKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTM
KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYW
QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNIGSVT
RWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAPNWDKFHQLSCFQRLPHGCE
PQFLSRLIWLSGPGGLDIGGIGGGFWQELIHHELINDLVGWLLLTPEQIASIPGIGNARA
EKIYQQFQRAKQQPFSRWLLALGFPQVVSVDAQWQVVLRRSLSEWATMAGIGQMRAKQIK
HFLDHPDVQALADFLSTQKVVGFELTE

NT seq 1704 nt +upstreamnt +downstreamnt
atgaacatactgaatctaaagataataatgttcctattaatatctaacaccatagtggtg
ggcggtgcttgggctacatcaacatgccctgattggcctgcaaccagaatagcggttgag
attaacgcgttggagcaacagttgaataagtggtcggccgcttaccatcagcaaggccat
agcccggtcacggatgacatttatgatcaattacaggacaaattacgtgtgtggcaatcc
tgtagggggttacctgataagacggaaagccagccgatccccggcaaagggcaatttctt
cacccagttgcccataccgggttaaaaaaactcaaagatgaaaccgccctcacaaggtgg
atggcggggcggaaaaatctctgggtacaacccaaggtcgacggtgtggcagtgacactg
gtttatcacggggggaaattggtgcaacttcttagtcgaggaaatggagtaaaaggtcaa
aactggacagaaaaagcgccatttatttctgctattcctcaatatattgcaaatgcgcct
gcactattaacgttgcaaggggagttgtttctactgatggatggccaccagcaagcaaaa
tcgggtggggtgaatgccagatcaacggtggcaggtgcactgatgcgcaaatctccgtct
ccgctattagctcaagttggggtctttatttgggcatggcctgatggcccaacaaccatg
aaagagaaggtggcactattacaggtaatgggttttccttttacagctaaatacagcgag
cccgtcatgtcgcatcttgatgttgtgcaatggcgtcagttctggtttcaagcaccactg
ccgtttgtcaccgatggtgttgtggtcaggcaagaggaggagccagctggtcgttattgg
caggcaacaccggggcagtggtctatggcgtggaagtatccgcctttgcaacacattgcc
gaagtaaaagatattcattttacccttggacgaacgggtaaaggcacggtggtattagag
gttttaccgataaaaattgatgataaatggattcgtcgagtgaatattggttcggtcacc
cgttggaaacaatgggacatcgctcctggtgatcacattacattggcacttgccgggcat
ggtatccctcggctagataacgttgtctggcgagtacaccaacggaatactattacggca
cccaattgggataaattccatcagctcagttgctttcaacgcttaccacatggctgtgaa
cctcagtttttatcccgcttgatatggcttagtggcccaggggggctagatattggcggc
atcggtggcggcttttggcaagagcttattcaccatgagttaattaatgatttggtcgga
tggttattactaacaccagagcaaattgcaagtatccctggaattggaaatgcgcgggct
gaaaaaatttatcaacagtttcaacgggcaaagcagcaacccttttctcgttggttgctg
gcattggggttcccgcaggttgtttccgttgacgcgcagtggcaggttgtattgcgccgg
agtctatctgaatgggccaccatggccgggattgggcaaatgagagcaaaacaaattaag
cattttttggatcaccccgacgtacaagcactggctgatttcttatctactcagaaagtt
gttgggttcgagctcacagagtaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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