KEGG   Yersinia pestis CO92 (biovar Orientalis): YPO0428Help
Entry
YPO0428           CDS       T00063                                 

Gene name
holD
Definition
(RefSeq) DNA polymerase III subunit psi
  KO
K02344  DNA polymerase III subunit psi [EC:2.7.7.7]
Organism
ype  Yersinia pestis CO92 (biovar Orientalis)
Pathway
ype00230  Purine metabolism
ype00240  Pyrimidine metabolism
ype01100  Metabolic pathways
ype03030  DNA replication
ype03430  Mismatch repair
ype03440  Homologous recombination
Module
ype_M00260  DNA polymerase III complex, bacteria
Brite
KEGG Orthology (KO) [BR:ype00001]
 Metabolism
  Nucleotide metabolism
   00230 Purine metabolism
    YPO0428 (holD)
   00240 Pyrimidine metabolism
    YPO0428 (holD)
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    YPO0428 (holD)
   03430 Mismatch repair
    YPO0428 (holD)
   03440 Homologous recombination
    YPO0428 (holD)
Enzymes [BR:ype01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     YPO0428 (holD)
DNA replication proteins [BR:ype03032]
 Prokaryotic Type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     YPO0428 (holD)
DNA repair and recombination proteins [BR:ype03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   MMR (mismatch exicision repair)
    DNA polymerase III holoenzyme
     YPO0428 (holD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_III_psi CSTF_C Phage_TAC_6
Motif
Other DBs
NCBI-GeneID: 1173274
NCBI-ProteinID: YP_002345504
UniProt: Q7CG57
Position
448861..449298
Genome map
AA seq 145 aa AA seqDB search
MASRRDLLLQQLGITQWVLRRPAVLQGEIAIHLPEDTRLLIVAQQLPEHGDPLLCDVLRS
LGLTPHQVYALTPDQVAMLPEDTQCNSWRLGISEPLAVAGAQLHSPELAGLYQDAGAKRA
LWQQICHYEADFYPDASRSGHSIPN
NT seq 438 nt NT seq  +upstreamnt  +downstreamnt
atggcatcaagacgagacttgctgttacagcagcttggcattacgcagtgggtattgcgc
cgtcctgccgtcttgcagggtgagattgcaatacatttacctgaagatacccgcctactg
attgtggcacagcaactgcctgaacacggtgatccactgttgtgcgatgtgctacgcagt
ttgggcctaaccccccatcaggtttatgccttgacgccggatcaggtcgcgatgttgccg
gaagatacgcagtgcaacagttggcgattgggcatcagtgagccgcttgcggtggccggt
gcacaattacatagcccagaattagctgggctttatcaagatgcgggcgctaagcgcgca
ctttggcagcagatttgtcattatgaagcagatttctatcctgacgccagccgatctggc
cacagcataccaaattga

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