KEGG   Yersinia pestis Harbin 35 (biovar Medievalis): YPC_4831
Entry
YPC_4831          CDS       T01874                                 
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
yph  Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph03030  DNA replication
yph03430  Mismatch repair
yph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:yph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YPC_4831
   03430 Mismatch repair
    YPC_4831
   03440 Homologous recombination
    YPC_4831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yph03032]
    YPC_4831
   03400 DNA repair and recombination proteins [BR:yph03400]
    YPC_4831
Enzymes [BR:yph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     YPC_4831
DNA replication proteins [BR:yph03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     YPC_4831
DNA repair and recombination proteins [BR:yph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     YPC_4831
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger HHH_6 PHP UDG
Other DBs
NCBI-ProteinID: ADW01159
Position
pMT:complement(55145..58669)
AA seq 1174 aa
MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGDDMAVIC
GVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKR
EQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGRDNFYSVVY
PHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRL
RIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPALPK
MADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLM
VRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLDLPDAD
LDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADMAVSKEFK
NLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVER
TPVELRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPL
DDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGM
LDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAI
GKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGV
KLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPA
EFFAAALTILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAV
KGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEPGS
LPATDPERLRDQAELMGNLVIDAVKASRPFEMNPKRSAEVNVLMTRMAAEMGLGDDLIRP
SIGIKPKIMVILDNANGNDGRTGYFMENGYDDFKAKLLTAGDLRMGDLYVTGVCKKVKDK
EKDYTKDEIGQFTDFMREEINLVRPTYVLTCGSRATSLFNNKSKPSDLVGRKEYLPELDV
TVFYGFNPNILYFRPEEGEKLEAILAEVAETISK
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgaaggctctgatggtcagaactgacttctccctgggagagtcagctctaaaagcagaa
aacgcggtgaaaatcgcgagagacgctggctacactgctgtcatttccgctgacagcatg
aacattgccagtgtgattcccctgcagcgtgccgctggcgacgatatggcggttatttgt
ggtgttaagctgaatgtggtcgacgatccgacatacgagcaccgcgcccgccttgcgaaa
gaatcagagagatgtatggaatcattggtgcgtgatcgcagctactgcttcacggcactg
ataaagaatgagcaaggttatcgcgacgtgtgcgaactgatgaccttagcgaacaagcgc
gagcaattctactttgtcccgcgtctggcgctcgaccaactggcggccgcgtatgccaaa
ggcaacatcatcctgctgacgtccgacattggcagtgtattccagcgccgggacttcgca
aagattatcgggacgctggtcacagctggaggacgcgataacttctacagcgtggtttat
ccgcaccctaccccattctacgaccagattaacgtccgggcgatgaaagtagcgagcgca
ctgaaaatagagccagtggcgttctatcccgcttattacgaagcggtcgacgacgctgac
attaaagacattgcgcacatggttacgaacaacatcaaaatcgaccagccgcatcgtctg
cgtattccccaccagcgagataacgccgttaatggtcgccgccatctccttgaagcgctg
aaagccttctccgttcgcatggatgtaccggtaacagctgcaatggcctcaacaacgcag
gacaccattatcgaagcctgcacatggcgctggcatgaattgccaccagcactgcccaag
atggcagacgacgagcctgcaacgctgatgaagctggctgtcgcggggctgcgcaagcgt
cttactaccaaagagtttggctacacaccaccggcttctgagcaccgcgtgtatgttgat
cgtctgaagtacgaaatggacacgctgacccgtctgggcttctgtggctacttcctgatg
gtgcgcgacctgatgaatcacagccgtgaaactggcattcctgtcgggccaggtcgtggt
tcctctgccggttctctggtggcgtggtgcatcggcataaccaacgtcgatcctatccgt
cacggtcttctgtttgagcgtttcatcaaccctgaacgtctcgacttaccggatgcggat
ctggacttcagccaggcacgtcgccatgaggtgatcgagtatctgaatgaacgctatggc
gaagattacgttgccggtattccgaacttcacctatctgggcgcggcttctgcgctgcgt
gacaccgcacgtatttacggtgtcgatgctgcggatatggcggtatccaaagagttcaag
aatctggaggacgatagcctgtcgctggaagagctgcgcgagcaactggccagcctggac
aaatacgccacgaaatacccggaagcgttcaaagcggcgtgtaagctgcaaagcctgatg
cgtggttttggtcgccacgctgcggggatgatcgtcgctggcgttccactggtagagcgc
acgcccgtcgagctgcgtggcaatgctcgctgtattgcattcgataaacgttactgcgag
gcgatggggctgattaagctggacgttctcggtctggcaacgctcgatctgttggatagc
gcgaaacgctacatcaaagagagtaccggggaagacatcaatctcgatgctatcccactg
gacgatcgcaaggttctggatgggttcgctgcagggtacacgcagggcgtattccagctg
gagtccggtcccatgcgcaagctgcttaaagatctgggcggtggcatcgagccaatgagc
ttcaaaaccgttgtcgccacgaccgcactcttccgacctggcccgattcaatccggcatg
ttggacgactatgtctccgtggccaaaggcttcatggctccacagtcgctgcacccggta
ctggacgagcttaccgcggaaaccaacggcgtgattctgtatcaggaacagacgatgaac
gcgacacgattgctggccggtttcacgatggccgaagcagatggtgtacgtaaagcgatc
ggtaaaaaggatatggaaaagatgaagagcatgggcgagaagttcgtcgttcaggctcaa
gctggttggatcgacgttgagatggaagacggcaccacgcagcgtattcaccgcgcggaa
cacttcaaatgtgaggacggcgcactgcggacggtcgaagaagcgctggaggcaggtgtg
aaattgccgatggctgctgtacgcgttacagggtcacaaccgggcttgtctgagacgaaa
gctaaggagatctgggatgccttcgagaagaacggtgcgtatcagttcaacaaatcacat
cccgttgcctactcgctgatcagctatcagtctatgtggttaaagacacattaccctgct
gagtttttcgctgctgcgctcaccattctgggcgaggataagcaccaggggctggttaag
gatgcgctgacctatggcattcacgtattgccaccagacgttaacgtgtcatctaaccga
attgagatccgcacgctggaagacggcagccaggttctgtatgcgccattctctgctgta
aaaggctgctctgagaatggttgccaggccatcatgagagcgcgtgagaaagttggcggc
aaattcgagtcacttgagcaatttgaggaagcggtcgagaagcgtgcgtgtgcgtgtaac
agccgggtacgcgagtcactgcaaaaagtaggtgcgttcgcatcgattgagcctggcagt
ctgccagcgacagatccggaacggctgcgcgaccaggctgaattgatgggcaatctggtg
atcgacgctgtaaaagcctctcgaccgttcgagatgaaccctaaacgctctgccgaagtg
aatgtactgatgacacgcatggcggctgaaatgggtctgggagacgacctgatacgccca
agcattggcattaagccgaaaatcatggtcattctggacaacgcgaacggcaatgatggg
cgtactggctacttcatggagaacggctacgacgactttaaggcgaagttgcttactgca
ggcgatttgcgcatgggagatctctacgtcaccggcgtgtgcaaaaaggtgaaggacaaa
gagaaggactacaccaaagacgagataggccagttcaccgactttatgcgtgaagagatc
aatctggtgcgtccgacctatgtgctgacgtgtggcagccgggcgacgtcactcttcaac
aacaagagcaaaccatccgacctggttggacgcaaagagtatctgccagagctggatgtg
accgttttctacggatttaacccgaacattttgtactttcgcccagaggaaggcgaaaag
ctggaagcaattctggcagaggtagcggagacaattagcaaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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