KEGG   Yersinia pestis Harbin35: CH55_200
Entry
CH55_200          CDS       T03717                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ypj  Yersinia pestis Harbin35
Pathway
ypj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ypj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CH55_200 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ypj03400]
    CH55_200 (mfd)
Enzymes [BR:ypj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CH55_200 (mfd)
DNA repair and recombination proteins [BR:ypj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CH55_200 (mfd)
SSDB
Motif
Pfam: MFD_D3 TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H SNF2-rel_dom ERCC3_RAD25_C HTH_53 RecG_dom3_C
Other DBs
NCBI-ProteinID: AJK06879
UniProt: A0A3G5L5B4 A0A2U2GWD1
Position
complement(221935..225381)
AA seq 1148 aa
MSQQYRYSLPERRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQ
QFSPQPVSTLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNEPY
RIDFFDDDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDKAAIELFRSQWREQFEVRRD
NEHIYQQVSKGIWPAGIEYWQPLFFSQQLPTLFSYLPENTLLVNTGDLESSAERFWQDVN
QRFESRRVDPMRPLLAPESLWLRVDALFNELKEWPRVQLKTEAQPAKAANTNLCYQPLPD
LSVQAQQKAPLDNLRRFIESFHGSVVFSVESEGRRETLQDLLARIKLSPTLITTLSQAAN
PGHYLMVGASERGFLDTDKQLALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADDNA
PLHRLGSDVWSRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKHDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVIREAILREILRGGQVYYLYNDVENIEKVTQKLAELVPEARITI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPEDFISDV
NIRLSFYKRIASARNETELDELKVELIDRFGKLPDPARYLLHTAELRQQAQKLGIKRIEG
NERGGFIEFGENNKVDPVYLIGLLQRQPQIYRLEGPTKLKLVQDLSDRAQRLKFITELLA
AFAQHRIA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgtcccaacaatatcgttattcattgcctgaacgacgtggtgatacccgtcagttaggc
cagttgaccggatcagcctgtgcggtcgaatgtgccgaaatcattgaacgccatgatggc
ccggtaatgctgattacccccgatatgcaaacggccttgcgcttgcgtgatgagatccag
caattctcgccacaacccgtaagtaccctctccgattgggaaacgctgccttacgatagc
ttctcgccacatcaggatattatttcggcccgcctctcttgtttgtatcatcttccggca
atgaaacgcggtgtcattattctcccaattaataccctgatgcaacgagtgtgcccacac
gaatttctacatggccacgctttggtgatgaaaaaaggccagcacttgtcacgggataag
ttacgcgcccaacttgagcaagcgggctatcgcagtgttgaacaggtcatggagcacggt
gagtttgcgacgcgaggtgcgttgctggacttatacccaatggggagcaatgaaccgtat
cggattgatttttttgatgatgacattgatagcctgcgggtatttgacgttgattcgcaa
cgcacactcgtcgaagttgagcaaataaacttactgccagcacatgagttcccaatagat
aaagcggcgattgaattattccgtagccaatggcgtgaacagtttgaagtccgtcgcgac
aacgaacatatttatcagcaagtgagtaaaggcatctggcctgcgggtatcgagtattgg
cagccgctgtttttcagccagcaattaccgacattgtttagctatctgcctgaaaatacc
ttattggtaaacaccggagatctggaaagctcggctgaacgcttctggcaggacgttaac
caacgcttcgaaagccgccgtgttgacccaatgcgcccactgttggcccccgagagcttg
tggcttcgggttgatgcgctgtttaatgaattaaaagagtggccgcgtgttcagcttaaa
acagaggcgcagcccgccaaagccgcgaataccaatttatgttatcaaccgctgcccgat
ttatccgttcaggcacaacaaaaagcgcctcttgataatctgcgtcgctttattgaatcg
tttcatggcagtgtggtgttctcggttgaaagtgaaggccgccgtgaaaccttacaagac
ctgctggcacggataaaactcagcccaacactgatcactacgctgtctcaggcggctaac
cccggccattatctgatggttggggcctcggaacgtggcttcctcgatactgacaaacaa
ctggcgctgatttgtgaaagcgacctactcggtgagcgtgtcagccgtcgccggcaagat
aaccggcggaccatcaacaccgatacgttgatccgtaatttggcagaactccgccccggc
cagccggtagtccatctggaacacggtgtcggccgctatctgggactaaccacccttgaa
gcgggtgggataaaggctgaatacctgatattgacttacgccggtgaagataaactgtat
gtccccgtgtcatcattgcatctcattagccgctattcagggggtgcggacgataacgcc
ccgttgcataggttaggcagcgatgtctggagccgggcacggcaaaaagccgccgagaaa
gtgcgggatgttgctgctgaactgctggatatctatgcccagagggcggttaaatctggc
tttaaatttaagcatgaccgtgagcaataccagctgttctgccaaagcttcccgtttgaa
accacgccagatcaagagcaggcgatcaacgcggtgctcagtgatatgtgccaaccgtta
gccatggaccgcttggtttgtggtgatgtgggctttggtaaaacggaagtggcgatgcgg
gccgcatttctggccgttaccaataataaacaagtggcggtgttggtacccaccaccctg
ctggctcaacagcattttgataatttccgtgaccgctttgccacttggccggtacggatt
gagatgctatcccgttttcgcagtgccaaagagcagcaagtcattctggaacaagccgct
gaaggcaaaatcgatatccttatcggtacccataaattgctgcaaagcgatctgcattgg
cacgatctcggcctgctgattgtggatgaagaacaccgcttcggcgtgcgtcataaagag
cggatcaaagcgatgcgggctgatgttgatatcctgaccctgacggccacgccaatccca
cggacactgaatatggcgatgagtggcatgcgtgacttatcgattatcgccacccctccg
gcacggcgtctggcggtaaaaacctttgtccgcgaatacgatagcctggtgatccgtgaa
gccatattgcgtgaaatcctgcgcggtgggcaagtctattacctgtacaacgatgtggag
aatatcgaaaaagtcacgcagaaactggctgaattagtccctgaggctcggataaccatc
ggccatggtcaaatgcgtgaacgggatttggaacgggtgatgaatgatttccaccatcaa
cgcttcaatgtgctggtctgtaccaccattattgaaaccggtattgatattcccagcgcc
aataccattattattgagcgagcggatcacttgggtctagcgcagttgcaccagctcaga
ggccgggtcgggcgctctcaccatcaggcttatgcctacttgctgacccccaatccaaaa
gccatgagcaccgatgcgaagaaacggctggaagccattgcgtcactggaagatctcggt
gcaggttttgcattggcgacacatgatttggaaatccgtggtgccggggagctattgggc
gaggaccaaagcggccagatgaccacgattggcttctcgttgtatatggagctactggaa
agtgccgtagatgcgctaaaagagggccgtgagccttcattagaagacctgaccagcaac
caaaccgaaatagaaatgcgcatgccggtgctgctgccagaggatttcatttcagatgtg
aatatcaggctgtcgttctataaacgtatcgccagtgcgcgcaacgaaaccgagctggat
gagttaaaagttgagctaatcgatcgctttggcaagttacccgaccccgcccgctattta
ttgcataccgccgaattgcgtcaacaagcccagaaactgggtatcaaacgtattgaaggc
aatgagcgtggcggtttcattgagtttggcgagaacaataaagtggatccggtgtatttg
attgggctgttacaacggcaaccacagatttaccgtttggaagggccaaccaaattgaag
ttggtgcaagatttaagtgatcgggcgcaacggttgaaatttattacggagttactggcg
gcatttgcacaacatcgcattgcctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (2)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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