KEGG   Yersinia pestis Harbin35: CH55_4084
Entry
CH55_4084         CDS       T03717                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ypj  Yersinia pestis Harbin35
Pathway
ypj03030  DNA replication
ypj03410  Base excision repair
ypj03420  Nucleotide excision repair
ypj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ypj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CH55_4084 (ligA)
   03410 Base excision repair
    CH55_4084 (ligA)
   03420 Nucleotide excision repair
    CH55_4084 (ligA)
   03430 Mismatch repair
    CH55_4084 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypj03032]
    CH55_4084 (ligA)
   03400 DNA repair and recombination proteins [BR:ypj03400]
    CH55_4084 (ligA)
Enzymes [BR:ypj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CH55_4084 (ligA)
DNA replication proteins [BR:ypj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CH55_4084 (ligA)
DNA repair and recombination proteins [BR:ypj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CH55_4084 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CH55_4084 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CH55_4084 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CH55_4084 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT 5_3_exonuc DNA_pol_lambd_f BRCT_2
Other DBs
NCBI-ProteinID: AJK09067
UniProt: A0A3G5L7T2
Position
4446687..4448699
AA seq 670 aa
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAG
FEQLNEEARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHI
QCLMQFKAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAG
KLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRA
ADIETLKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKVVSWPEPQQIVVEESDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVID
EAEMIRLLGE
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaatcgataatccaacaaattaatcaactaagaacttcattgcgccatcatgaacat
caataccatgtgctggatgcccccgaaatccctgatgctgaatacgaccgtatgatgcaa
caactgcgtgatttagaagcacaacatcctgaactggtgactaatgactcaccgacgcaa
cgggttggtgccgcgcctcttgatgcctttgaacaggtgaagcacgaagtaccgatgctg
tctcttgataatgtgtttgatgaagaaagttatctggccttcgataaacgggtacatgac
cggcttaaaacggcagaaccactgacattttgttgtgaactgaagctagatggtctggcg
gtcagtttattgtatgaaaatggtgaattggtgagagccgcgacacgtggtgatggcact
acgggagaaaatattaccgctaatgtgcgtactattcgtgccattccactgcgcctacat
ggggataatgtcccgcggcgcgtagaagtccgtggcgaggtttttatgccacaagccggt
tttgaacagcttaacgaagaggctcgtcgcaaaggagggaaggtctttgccaacccacgg
aatgcggcggcgggatcgttacgccaacttgatccccgtattacagccaaacggccactc
accttcttctgctatggtgtcggtctgctggatggcggcgagctaccccgtagccatatt
cagtgtctgatgcaatttaaggcatgggggttacccgtgagtgagcgggtgaaactctgc
actggcagtgatcaggttattgctttttatcgtcaaatagagcaagaccgcgcaggcttg
ggctttgatattgatggtgtggtgatcaaagttgatgatcttgctttgcaggagcaattg
gggtttgttgcgcgtgcccctcgctgggcgacggcatttaaattcccggcgcaggaacag
atcacacaggtccgtgaagtggaatttcaagtgggtcgtaccggtgccattactcccgta
gcccgtctggagccggttcaggtggctggcgtgattgtcagtaatgcgacattgcacaat
gccgatgaaatcgaacgccttggtttgcgtattggcgatacggtcattgtgcgccgtgcg
ggtgatgtgatcccacaagttgttggtgtggtcatggaacaacgccctgatgatacgaag
gagatcactttcccaagccaatgcccagtgtgtggctccgatattgaacgggtggaaggg
gaggctgttgcccgctgcactggcggcttgttctgtgctgcacagcgtaaagaggcactt
aaacattttgtctcccggcgagcactggatgtagacggtatgggcgataaaattatcgaa
caactggtcgagaaacagtatgttgaaaatccagctgatttattccaactgaccgcaggt
aagttgacggggttagatcggatggggccaaagtctgcgcaaaatctgattgcggcgctg
gagaaggccaaacagaccacctttgcacgcttcttgtatgccttggggatccgcgaagtg
ggcgaagcgacggccgcaaatttagccgctcacttccgcactctggataatctgcgtgca
gcagatattgagacgttaaaaagtgtgccggatgtcggcgaggtggtggctaaacatgtg
atgaacttcctcagtgaggaacataatcagaaagtcatcgaagaactggagaaagtggtc
agttggcctgagccgcagcaaattgtagtcgaggagagcgatagccccttcgctggaaaa
acggtggtcctgacggggtcattgacgatcctttcacgggatgaagcgaaagaccgcctg
acagcattaggcgcaaaagtgagtggcagtgtctctaaaaaaacgcatctggtgatcgct
ggcgaggcggctggttctaaactggcgaaagcgcaggaactcggaattaaagttattgat
gaagctgaaatgatccgtttgctgggtgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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