KEGG   Yersinia pseudotuberculosis IP 32953 (serotype I): YPTB2479
Entry
YPTB2479          CDS       T00195                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
yps  Yersinia pseudotuberculosis IP 32953 (serotype I)
Pathway
yps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YPTB2479 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yps03019]
    YPTB2479 (rne)
   03009 Ribosome biogenesis [BR:yps03009]
    YPTB2479 (rne)
Enzymes [BR:yps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     YPTB2479 (rne)
Messenger RNA biogenesis [BR:yps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     YPTB2479 (rne)
Ribosome biogenesis [BR:yps03009]
 Prokaryotic type
  rRNA processing factors
   YPTB2479 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: CAH21717
UniProt: Q669K5
Position
2923037..2926729
AA seq 1230 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPSLSYLLPQLHEAEMAQPLEEATIERKRPEQPALATFSLPTEVPP
EEAPTVAKAKPAVATPAAVSTDVEQPGFFSRLFSGLKNMFGASAEAEVQPAEVVKTDASE
NRRNDRRNPRRQNNGRKERNDRTPREGRDNSSRDNTNRDNTNRDNTSRDNTNRDNTSRDN
ANRDGANRDNSNRDNSGRDNVSREGREDQRRNNRRPAQPTTTSQGQTEVVEADKAQREEQ
PQRRGDRQRRRQDEKRQAPQEIKADVAEAPVIEEVQPEQEERQQVMQRRQRRQLNQKVRI
QSANDELNTLESPVSAPVAQVVVAEVQEEVKLLPQITAQTDDDSANERTTNNENGMPRRS
RRSPRHLRVSGQRRRRYRDERYPAQSAMPLAGAFASPEMASGKVWVRYPVTPVVEQVVVE
QVVVEQIAIEQTTTVEQTAIVEQVSVANIVTAQLPVEQVQNTVAEQESSATPSVMTTPTV
AVTLAPQHKPGGSSSSAAAVPGRAPIVAAVPVVAETTAAETVVAKTEAAIDAVAVVESIA
AVETATVEPVVTEEPNVTEPAVAEPAIETDPVEETTSVVEIAPTVESTPMIEDTAVVVAA
TVVDTTPETASTVQDDIVEETVVGETAVEAVNISETVAEETAITEPAAEAIATQQTTIAQ
ETIAEPTVETAIDVVAVVKQPAVAHPEGVVFKHFASAPMTKAPAPDYAPESPTKGHWERP
TFDFSGKGSAGGHAAATQATAPATKPQSVE
NT seq 3693 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgtgttgcccttgtagat
ggacagcggttgtatgatctggatattgaaagcccaggccatgaacagaaaaaagcgaat
atttataaaggtaaaatcacccgaatcgaacctagtctggaagccgcttttgttgattat
ggcgcggaacgacatggtttccttccattaaaagaaatctctcgcgagtacttccccaat
aattactcttcccatggccgcccaaacatcaaagatgtcttgcgtgaaggccaggaagtt
attgttcaggttgataaagaagaacgcggcaataaaggtgctgcattaaccactttcatt
agtctggctggcagctatttggttctgatgccaaacaacccacgtgcgggcggtatttct
cgccgcatcgaaggtgatgaccgcaccgagctgaaagaagccctatcttccctgcaatta
cctgatggcatgggtctgattgttcgtactgcgggtgtgggcaaatctgctgacgcactg
caatgggacttgtcattccgcctgaagcactgggatgcgattaaaaaagcggctgaaggt
cgccccgcacccttcttaatccatcaggaaagtaacgtgatcgtacgtgcttttcgcgat
tacctgcgcccagatatcggcgaaattctgattgacaatccgaaggttctcgaactggca
aaagagcatattgctgcccttggtcgcccggatttcagcagcaaaatcaaattgtatagc
ggtgaaattccgttattcagtcattatcaaattgagtcgcagatcgaatcggccttccaa
cgtgaagtgcgtttgccttctggtggctctatcgttattgacacgaccgaagcactgacg
gcgattgatatcaactcagcccgagccacacgtggtggtgatatcgaagagaccgcgttt
aataccaaccttgaagccgctgacgaaattgctcgccaattacgtttacgtgaccttggt
ggtctgatcgttatcgacttcattgatatgaccccggtacgccatcaacgtgaagttgaa
aaccgtttacgcgatgctgtccgtcaggaccgtgcccgtatccagattggtcgtatctca
cgctttggtttgctggaaatgtcccgtcagcgcctcagcccatcgctgggtgaatccagt
caccacgtctgcccacgctgtagcggtaccggcaccgtacgtgacaatgaatcgctgtca
ctttctattctgcgtttgattgaagaagaagcgctgaaagagaatacccatgaagttcac
gccatcgtaccggtacaaatcgcatcgtacctgttgaacgaaaaacgtgaatcagtaaac
gctattgagaagcgtcaaggtggtgtccgtgccgtgatcgtgccaaacgatcagatgcaa
acaccgcactactctgtcctgcgcgtacgcaaaggcgaagaagtcccgtctctcagctat
ctgttgccacaactgcacgaagcagaaatggcgcaaccgctggaagaggccaccattgaa
cgtaagcgcccggaacaaccagcattggctaccttctctctgccaacagaagtgccacca
gaggaggcccctaccgtagccaaggctaaacctgcggttgcaacacccgccgcggttagt
actgacgtagaacaacctggcttctttagccgtttgttcagtggcttaaaaaatatgttt
ggtgcttccgctgaagcagaagtgcaacccgctgaagttgtaaaaaccgacgctagcgaa
aatcgccgtaatgatcgccgcaatcctcgccgccagaataatggccgtaaagagcgcaat
gatcgtactccacgcgaaggtcgtgataattccagccgcgataacaccaaccgtgataac
accaaccgtgataacaccagtcgtgataacaccaaccgtgataacaccagtcgtgataac
gctaaccgcgatggcgctaatcgtgataattccaatcgcgacaacagtggccgcgataac
gttagtcgtgaaggccgcgaagatcaacgccgcaacaacagacgtccggcccagccaacg
acaacatcgcaagggcaaactgaggttgttgaagccgataaagcgcaacgtgaagaacaa
ccacagcgccgtggtgaccgtcagcgtcgtcgtcaggatgagaagcgtcaggcaccacaa
gaaatcaaagcagatgttgcggaagcccctgttatagaagaggtacaacctgagcaagaa
gaacgccaacaggttatgcaacgtcgtcagcgtcgccagttgaatcagaaagtccgtatt
caatcggcaaatgatgaactgaatacgttggaatctcctgtcagtgcacctgttgcgcag
gtggtggtggctgaagtacaagaagaagtgaagttactgccacaaattactgctcaaact
gatgatgacagtgctaatgaacgtactaccaataatgaaaatggtatgccacgtcgttcc
cgtcgttcaccacgccatctgcgtgttagtggtcaacgccgtcgccgttatcgtgatgaa
cgttacccggcacaatcggccatgcctctggcaggggcttttgcctcaccagaaatggca
tccggtaaagtgtgggttcgttatccagtgacgccagtcgttgaacaggttgtcgttgaa
caggttgtcgttgaacaaatcgccattgaacaaactacaaccgttgagcaaacagccatc
gtcgagcaggtcagtgtagcgaatattgtcactgcgcaattgcctgtagagcaggtgcaa
aacaccgttgcagaacaagaatcgagtgcaactccatctgttatgacaacaccaaccgtt
gcggtaacactggccccacaacacaaaccggggggttcttcatcttcggctgctgcggtt
ccaggccgtgcacctatcgttgctgcagtgcctgtcgttgctgaaacgactgctgctgaa
acggttgttgctaaaactgaagccgctattgatgcggtggctgttgtggaatcgatagct
gctgtggaaactgcaactgtagaaccggttgttacagaagaaccgaatgtcacagaaccg
gccgttgccgagccagcgattgaaactgatcctgtcgaagaaacaacatcagttgtagag
attgctccaaccgttgaatcaacgcctatgatcgaagatacggctgttgtagtcgctgcg
acggtggttgacactacaccagaaactgcgtcaaccgtgcaagatgatattgttgaagag
acagtagttggagagacagcagttgaagcggtaaatatctctgaaactgtggctgaagag
accgcaataacggaacctgctgctgaagccattgctactcagcaaaccactattgcgcag
gagaccattgctgaaccaacggttgaaaccgctattgatgtggttgcggtagtcaaacaa
cccgcggttgcgcatccggaaggggtggtgttcaaacacttcgcttcagcgccaatgacc
aaagcgccagcacctgattacgcccctgaatcaccgaccaaaggtcactgggagcgtcca
acctttgatttctcaggcaaaggttctgctgggggtcatgccgcggctacccaggcaact
gcacccgcgaccaaaccgcaatctgttgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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