KEGG   Yersinia pestis D182038: YPD8_1338
Entry
YPD8_1338         CDS       T01833                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
ypx  Yersinia pestis D182038
Brite
KEGG Orthology (KO) [BR:ypx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypx03032]
    YPD8_1338
   03400 DNA repair and recombination proteins [BR:ypx03400]
    YPD8_1338
Enzymes [BR:ypx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     YPD8_1338
DNA replication proteins [BR:ypx03032]
 Prokaryotic type
  DNA Topoisomerases
   YPD8_1338
DNA repair and recombination proteins [BR:ypx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      YPD8_1338
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF zf-C4_Topoisom Toprim Zn_ribbon_recom Toprim_2
Other DBs
NCBI-ProteinID: ACY62023
Position
1712189..1714612
AA seq 807 aa
MKKDEKVALVNRMGVDPYHGWKAQYEILSGKEKVVAELKALAENADHIYLATDLDREGEA
IAWHLREVIGGDDKRFSRVVFNEITKNAIQQAFNQPGELNISRVNAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREKEIKAFVPEEYWELHADLVAKGDIPIQMEV
THAHGKPFKPVNREQTHAALTLLENARYKVLDREDKPTSSKPSAPFITSTLQQAASTRLS
FGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALTMVRGYIGDNFGDKYLPATPNQYSSK
ENSQEAHEAIRPSDVNVLAEQLKDMEADAQRLYQLIWRQFVACQMPPAKYDSTTLTVQAG
DFQLRAKGRTLRFDGWTKVMPALRKGDEDRTLPVIEVGSDLDLQKLIPSQHFTKPPARYS
EASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELM
NYDFTARMESGLDQVANDQAEWKAVLDGFFAEFSEQLEKAEKDPEEGGMRPNQMVMTSID
CPTCGRQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPDAEILNILEGDDAETNALRA
RRRCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEAGEFRIKGYEGPIVECEKCGSEM
HLKMGRFGKYMGCTNDECKNTRKILRSGEVAPPKEDPVPLLELPCEKSDAYFVLRDGAAG
VFLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPVVDKEGNKTLVRFSRKTKQQ
YVSSEKDGKATGWSAFYIDGKWVEAKK
NT seq 2424 nt   +upstreamnt  +downstreamnt
gtgaagaaagacgaaaaggttgccttagtcaaccgtatgggggtcgatccttatcatggc
tggaaagcgcagtatgaaattttgtctggcaaagagaaagtggttgccgagctgaaagca
ttagcagaaaacgcggatcatatctatctcgcaaccgaccttgatcgcgaaggtgaggct
attgcctggcatttgcgggaagtgatcggtggggacgataaacgttttagccgcgttgtc
tttaacgaaatcaccaagaatgcgattcagcaggcgtttaatcagcctggtgaactgaac
atcagccgtgtaaatgcacaacaagcccggcgttttatggatcgggttgttggctatatg
gtctctccactgttgtggaagaaaattgcccgtggcctgtcagctggccgtgtacagtca
gttgctgtgcgccttgtggttgaacgtgaaaaagagattaaagcattcgttcctgaagaa
tattgggagctacatgcagatttagtggctaaaggtgacattccgattcaaatggaagtc
actcatgcccatggcaagccatttaaaccggtaaatcgtgagcaaacacatgcagcgctg
acgttactggaaaatgcccgttataaggtgttggatcgtgaagataaaccgaccagcagt
aagcccagcgcacccttcattacctccaccttacagcaggcggcaagtacccgtctgagt
tttggtgtgaaaaaaaccatgatgatggcacagcgcctgtatgaagcgggtcatatcacc
tacatgcgtaccgactcgactaatttgagtcaggatgcattgacgatggtacgtggttat
atcggcgataattttggtgataagtatctgcctgcaacgcctaaccaatacagcagcaaa
gagaattcgcaggaagcgcatgaggccatccgcccttcagatgtcaatgtgttagctgag
cagttgaaagatatggaagcggatgcccagaggttgtaccaattgatttggcgtcagttt
gtggcgtgccagatgcctccggccaagtatgactcgaccacactgacagtgcaggcgggg
gatttccaactgcgcgccaaaggccgcacattgcgctttgatggttggaccaaggttatg
cctgcgctgcgtaaaggtgatgaagatcgcaccttgccggtgattgaagtgggcagtgat
ttagacttacaaaaactgattccgagccagcattttaccaagccaccggctcgttatagt
gaagcatcattagtgaaagagctggaaaaacggggtattggccgtccatcgacttatgcc
tctattatttcgaccattcaagatcgtggctatgtgcgggtagaaaaccgtcgcttctac
gcagagaaaatgggtgaaattgtgacagaccgcttggaagaaaacttccgcgagctgatg
aattacgatttcacggcacgaatggaaagcggtttggatcaagtcgccaatgatcaggcc
gaatggaaagcggtgctggatggcttctttgctgaattcagcgagcagcttgaaaaggca
gaaaaagatcctgaagaaggaggaatgcgcccgaatcagatggtgatgaccagcattgat
tgcccaacctgtggccgtcagatggggatccgtactgcgagtactggggtgttccttggc
tgttccggttatgcattgccgcctaaagagcgctgtaaaaccaccattaacttggtgccg
gacgctgagattttgaatattctggagggtgatgatgcggagactaacgcattacgtgcc
cgccgccgttgccagaaatgtggtactgcgatggatagctaccttatcgataatcaacgc
aagttacatgtttgcgggaataacccagcgtgtgatggctatgaaatcgaagcaggtgag
ttccggataaaaggctatgaaggcccaattgttgagtgcgagaaatgtggttctgaaatg
cacctgaaaatggggcgcttcggtaagtacatgggctgcaccaatgacgagtgtaagaat
acccgcaagattctgcgtagcggtgaagttgcaccaccgaaagaagatccggtaccattg
ttagagttgccttgcgagaaatcagatgcttatttcgtcctacgagatggcgcagctggc
gtgttcttggcagccaatacattccctaaatcgcgtgaaacccgtgcaccgctggtagaa
gaattggttcgctttaaagaccgtttgcctgagaagttgcgttatctggctgatgcccct
gtggttgataaagagggtaataaaaccctggtccgtttcagccgtaaaacgaagcaacag
tatgtttcatcagagaaagatggcaaagcaacaggctggtctgctttctatattgatggt
aaatgggttgaggcaaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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