KEGG   Yersinia pestis Z176003: YPZ3_0038
Entry
YPZ3_0038         CDS       T01210                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ypz  Yersinia pestis Z176003
Pathway
ypz03030  DNA replication
ypz03410  Base excision repair
ypz03420  Nucleotide excision repair
ypz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ypz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YPZ3_0038
   03410 Base excision repair
    YPZ3_0038
   03420 Nucleotide excision repair
    YPZ3_0038
   03430 Mismatch repair
    YPZ3_0038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ypz03032]
    YPZ3_0038
   03400 DNA repair and recombination proteins [BR:ypz03400]
    YPZ3_0038
Enzymes [BR:ypz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     YPZ3_0038
DNA replication proteins [BR:ypz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     YPZ3_0038
DNA repair and recombination proteins [BR:ypz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     YPZ3_0038
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     YPZ3_0038
   MMR (mismatch excision repair)
    DNA ligase
     YPZ3_0038
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YPZ3_0038
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB DUF3701 HHH_5 HHH RNA_ligase
Other DBs
NCBI-ProteinID: ADE62948
Position
53786..55489
AA seq 567 aa
MNILNLKIIMFLLISNTIVVGGAWATSTCPDWPATRIAVEINALEQQLNKWSAAYHQQGH
SPVTDDIYDQLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHPVAHTGLKKLKDETALTRW
MAGRKNLWVQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAP
ALLTLQGELFLLMDGHQQAKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTM
KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYW
QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNIGSVT
RWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAPNWDKFHQLSCFQRLPHGCE
PQFLSRLIWLSGPGGLDIGGIGGGFWQELIHHELINDLVGWLLLTPEQIASIPGIGNARA
EKIYQQFQRAKQQPFSRWLLALGFPQVVSVDAQWQVVLRRSLSEWATMAGIGQMRAKQIK
HFLDHPDVQALADFLSTQKVVGFELTE
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgaacatactgaatctaaagataataatgttcctattaatatctaacaccatagtggtg
ggcggtgcttgggctacatcaacatgccctgattggcctgcaaccagaatagcggttgag
attaacgcgttggagcaacagttgaataagtggtcggccgcttaccatcagcaaggccat
agcccggtcacggatgacatttatgatcaattacaggacaaattacgtgtgtggcaatcc
tgtagggggttacctgataagacggaaagccagccgatccccggcaaagggcaatttctt
cacccagttgcccataccgggttaaaaaaactcaaagatgaaaccgccctcacaaggtgg
atggcggggcggaaaaatctctgggtacaacccaaggtcgacggtgtggcagtgacactg
gtttatcacggggggaaattggtgcaacttcttagtcgaggaaatggagtaaaaggtcaa
aactggacagaaaaagcgccatttatttctgctattcctcaatatattgcaaatgcgcct
gcactattaacgttgcaaggggagttgtttctactgatggatggccaccagcaagcaaaa
tcgggtggggtgaatgccagatcaacggtggcaggtgcactgatgcgcaaatctccgtct
ccgctattagctcaagttggggtctttatttgggcatggcctgatggcccaacaaccatg
aaagagaaggtggcactattacaggtaatgggttttccttttacagctaaatacagcgag
cccgtcatgtcgcatcttgatgttgtgcaatggcgtcagttctggtttcaagcaccactg
ccgtttgtcaccgatggtgttgtggtcaggcaagaggaggagccagctggtcgttattgg
caggcaacaccggggcagtggtctatggcgtggaagtatccgcctttgcaacacattgcc
gaagtaaaagatattcattttacccttggacgaacgggtaaaggcacggtggtattagag
gttttaccgataaaaattgatgataaatggattcgtcgagtgaatattggttcggtcacc
cgttggaaacaatgggacatcgctcctggtgatcacattacattggcacttgccgggcat
ggtatccctcggctagataacgttgtctggcgagtacaccaacggaatactattacggca
cccaattgggataaattccatcagctcagttgctttcaacgcttaccacatggctgtgaa
cctcagtttttatcccgcttgatatggcttagtggcccaggggggctagatattggcggc
atcggtggcggcttttggcaagagcttattcaccatgagttaattaatgatttggtcgga
tggttattactaacaccagagcaaattgcaagtatccctggaattggaaatgcgcgggct
gaaaaaatttatcaacagtttcaacgggcaaagcagcaacccttttctcgttggttgctg
gcattggggttcccgcaggttgtttccgttgacgcgcagtggcaggttgtattgcgccgg
agtctatctgaatgggccaccatggccgggattgggcaaatgagagcaaaacaaattaag
cattttttggatcaccccgacgtacaagcactggctgatttcttatctactcagaaagtt
gttgggttcgagctcacagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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