KEGG   Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_00235
Entry
UGYR_00235        CDS       T03887                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
yrb  Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yrb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UGYR_00235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yrb03019]
    UGYR_00235
   03009 Ribosome biogenesis [BR:yrb03009]
    UGYR_00235
Enzymes [BR:yrb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     UGYR_00235
Messenger RNA biogenesis [BR:yrb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     UGYR_00235
Ribosome biogenesis [BR:yrb03009]
 Prokaryotic type
  rRNA processing factors
   UGYR_00235
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: AKA36964
Position
complement(55667..59128)
AA seq 1153 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSHYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYSVLRVRKGEEVPTLSYLLPKLHEEEMAQPLEEAPMERKRPEQPALATFSLPTEVPP
EAEPVTVAKPVAQPVAASAAQPGLFGRLMSGLKNLFAAPAEAEVKPQETEKTENTENRRQ
DRRNPRRQNNGRKDRGDRTPREGRENRESNRDNNTSTTRENTRENNRDGNREGREDQRRN
RRSNQPNTAVETVVENTENDKAQREGQQPRRERGDRQRRQRQAPQEVKAVEVIEVVGVVE
SVIPTEAVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNPVESTDSPTTAPAALIVQD
EVKLLAPSPATADEENSHERSANNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAM
PLAGAFASPELASGKVWVHYPVTPPQEQQVAESTIENLTETAANLVAPIAAAQPEIAAVA
PVVVTPVAETSVETVIAAPVAFKHQPGGSSSSAAAVPGRAPVAAPVVEPVVAEPVVAEPI
VAEPVVATLETAVAPAVETVTTESVIETPVVETPAAEATEVAIEAVVAQEAVVEEAVVEE
AVTETVVILEPVTAEVETAAAAPALDVVVEKVTETVAAATPIDNVVVAEEPAAATVITAI
VTQPADHPEGVRFKHHAFAPMTKAPASVASAPQATTQGEWQRPSFDFAGKGSAGGHAAIS
QATAPVTKPQSVK
NT seq 3462 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcggctttatgatctggatattgaaagtccgggccatgagcaaaaaaaagcgaat
atttacaaaggtaaaatcacccgaattgagccaagcctggaagccgcctttgttgattac
ggtgctgaaagacatggtttccttccattaaaagaaatctctcgcgagtacttcccaagt
cattattcttcccatggccgcccgaacatcaaagatgtattgcgcgaaggtcaggaagtt
attgttcaggttgataaagaagaacgtggcaacaaaggtgcagccttgaccacgttcatc
agtctggcgggtagctatttagttctgatgccaaataacccgcgtgctggtggtatttct
cgccgcatcgaaggtgatgaccgtaccgaactgaaagaagcgctttcttcattgcaatta
cctgatggcatgggtctgattgtccgcaccgctggcgtcggcaaatctgccgatgcgttg
caatgggatttgtcattccgcctgaagcactgggacgctatcaagaaagccgctgaaggc
cgtccagcgccgttcctgatccaccaggaaagtaacgttatcgtccgcgctttccgtgac
tatctgcggccggatatcggtgaaatcctgatcgataatccgaaggttctcgatttggcc
aaagaacatatcgccgccttgggtcgtccagatttcagcagcaaaattaaattgtacagc
ggcgagattccgttgttcagccattaccagattgaatcccagattgagtctgcgttccag
cgtgaagtgcgtctgccttccggtggttctattgttatcgataccactgaagcactgacc
gccattgatatcaactcagcccgcgcaactcgcggcggtgatatcgaagaaaccgcgttt
aataccaaccttgaagccgctgatgaaatcgctcgccaattacgtctacgtgacctgggt
ggattgattgttatcgactttatcgatatgacgccggttcgccatcagcgtgaagtggaa
aatcgtttacgtgatgccgtccgtcaggatcgcgcccgtattcagatcgggcgtatttcg
cgcttcggtttgttggaaatgtctcgtcagcgtctcagcccgtcattaggtgagtccagt
catcatgtgtgcccacgttgtagcggcaccggtactgtgcgtgataacgaatccttgtca
ttgtccattctgcgtctcattgaagaagaagcgctgaaggaaaacacccatgaagttcac
gctatcgttccggtacagattgcgtcctatctgctgaatgaaaaacgtgaatcagttaat
gccatcgagaagcgtcagggcggcgtgcgtgcggttatcgtgccaaatgaccagatgcaa
acaccacattactcagtactgcgtgtacgtaagggcgaagaagttccaaccctgagctac
ctgctaccaaaactgcacgaagaagaaatggcacaaccattggaagaagcgccaatggaa
cgcaaacgtccggaacaaccggcactggcgaccttctctctaccaaccgaagttccacct
gaagccgagccggtaaccgtggctaagccagtagcacagcctgtcgccgccagtgcagca
caaccaggtctgttcggtcgcttgatgagcggtttgaagaatctgtttgccgcgccagcc
gaagcggaagttaaaccgcaggaaaccgagaaaaccgaaaatactgaaaaccgccgtcag
gatcgtcgtaatccgcgccgccagaacaatggccgtaaagatcgtggcgatcgcacacca
cgcgaaggccgtgaaaatcgcgagagcaaccgtgataacaacacgtcgaccactcgtgag
aatacccgcgagaataatcgtgacggtaatcgcgaaggtcgtgaagatcaacgtcgcaat
cgtcgttcaaaccagccgaatactgcggtagaaaccgttgtagaaaatactgagaacgat
aaagcacaacgtgaagggcagcaaccgcgccgcgaacgaggtgatcgtcagcgccgtcaa
cgtcaggctccgcaggaagtgaaagcggtagaagttattgaagttgttggtgtagttgaa
tcggtaataccgactgaagcagtgcaacctgagcaggaagagcgccaacaggttatgcaa
cgccgtcaacgtcgtcagttgaaccaaaaagtacgaattcagtccgccaacgacgaactg
aatccggtggaaagtactgatagcccaaccactgcgcctgctgcactcatcgttcaagac
gaagttaaactgttagcaccatccccagcgactgcggatgaagagaacagtcacgaacgt
tcggccaacaatgagaatggtatgccgcgtcgctcgcgtcgctcaccgcgtcacctgcgt
gtgagtggtcaacgtcgccgtcgctatcgtgatgagcgttacccgacccaatcggctatg
ccactggcgggggcttttgcatcaccggaattggcatcaggtaaagtgtgggttcactac
cctgtgacaccaccgcaggaacagcaagttgctgaatccacgattgaaaatctgactgaa
actgccgctaacctggttgcaccgatagctgctgcgcagcctgaaattgctgctgtggca
ccggtagtcgtaactccggtcgctgaaacctcggttgaaaccgtgatagctgcaccagtc
gcattcaaacatcaacctggcggttcttcttcatctgctgccgccgtaccgggtcgtgct
ccggttgctgcaccagtcgttgagcctgttgttgctgaacctgttgttgctgaacctatt
gttgctgaacctgttgtcgcaactctggaaaccgcagtcgcaccagcggtcgaaaccgtg
actaccgagtcagtcattgagactcccgtcgttgaaacaccggctgctgaagcgactgaa
gttgcaattgaagctgtggtcgcacaagaagctgtagttgaagaagccgtagttgaagaa
gcggtaaccgaaactgttgttatcctggaaccagtaacagcagaagttgaaactgccgcg
gcggcaccagcacttgacgttgttgtggaaaaggtcactgaaactgtcgcggctgcaacg
cctatagataacgttgtcgtggctgaagaacccgcagcggccaccgtcatcaccgctatc
gtcacccagcctgcggatcatccagaaggcgtgcgttttaaacatcacgcgtttgcgcca
atgaccaaagcaccggcttcagtggcatcagcaccacaggctacaactcaaggtgaatgg
caacgcccttcctttgattttgccggtaaaggctctgctggcggacacgctgccattagc
caagcaacggcaccggttaccaagccgcagtccgtaaagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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