KEGG   Yersinia ruckeri YRB: BD65_1740
Entry
BD65_1740         CDS       T03611                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
yru  Yersinia ruckeri YRB
Pathway
yru03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:yru00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BD65_1740 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:yru03019]
    BD65_1740 (recQ)
   03400 DNA repair and recombination proteins [BR:yru03400]
    BD65_1740 (recQ)
Enzymes [BR:yru01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BD65_1740 (recQ)
Messenger RNA biogenesis [BR:yru03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BD65_1740 (recQ)
DNA repair and recombination proteins [BR:yru03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BD65_1740 (recQ)
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII Peptidase_S66 zf-CXXC
Other DBs
NCBI-ProteinID: AJI94576
Position
complement(1911983..1913812)
AA seq 609 aa
MSTAAVINKEQLAAQVLRETFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVAAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMENFLEQLEHWRPALLAVDEAHCISQWGHDFRPEYRALGQLKRRFPALPVIAL
TATADEATRGDIVRLLDLNQPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEDKPVGAQ
QDVERHKLNAMGAFAEAQTCRRLVLLNYFGEGQQQACGNCDICLDPPQRYDGLGDAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIREMGHDKLSVYGIGREQTHEHWVSVLRQLIHLG
LLSQNIAQFSALQLTEAARPVLRAEISLQLAVPRIQSLKPRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKANELLSVNGVGQRKLERFGAPFMAV
IRDHLDNGE
NT seq 1830 nt   +upstreamnt  +downstreamnt
gtgtctaccgcggcagtgataaacaaggagcaactggcagcgcaagtcttgcgagagact
tttggctatcaacaattccgaccaggacaacaagaaattattaacgcgacgctcgccggg
caggactgcctggtggtcatgccgacgggtggcggtaagtccttgtgttatcagattcct
gcgttggtgatggacggtttgacgctggtggtttccccgctgatttcgttaatgaaagat
caggttgatcaactcctggcttacggtgtagcggcaggctgccttaactcgtcgcaaacc
cgtgagcagcagttagccgtgatggacggctgccgtagcggccagattaagttgctttac
atcgctccggaacgtctggtgatggagaactttctcgagcagctcgagcattggcgtccg
gccttgctggctgttgatgaagcgcactgtatttctcaatgggggcatgatttccgtccg
gaataccgcgcgcttggccagcttaaacgccgcttccccgcgttaccggttattgcatta
accgccacggcggatgaagcgacgcgtggtgacattgttcgtctgttagacttgaaccaa
ccgctgattcaggtcagcagcttcgatcgccccaatatccgttataccttggtcgagaag
ttcaaacctttggaccaactgtggcgttttgtgcaggatcaacggggaaaaagcggcatt
atttactgtaatagccgcgccaaagttgaagacaccacggcgcgattgcaaagtcgtggg
ttgagtgtggcggcataccacgctgggctggacaatgaacggcgtgcgcaggtgcaggaa
gctttccagcgtgatgacctacaggtggtggttgccactgtggcctttggtatgggcatc
aacaagcctaacgtccgttttgtggtgcatttcgacattccgcgcaccattgaatcctac
tatcaggaaaccggtcgtgctgggcgtgatggcctacctgctgaggcgatactgctttac
gatccggcggatatggcatggttacgccgttgtctggaagataaacccgttggcgcacaa
caagatgtggaacggcacaagctgaatgcgatgggcgctttcgctgaagcgcaaacctgc
cgccgcttggtgctgcttaactattttggcgaaggtcaacagcaagcttgcggcaactgt
gacatctgtctggatccaccacaacgctacgatggattgggtgatgcgcaaaaggctcta
tcctgcgtgtatcgggttgggcaacgctttggcttggggtatatcgtggaggtgctacgg
ggagctaataatcagcgtatccgcgaaatgggtcatgataagctgtctgtctacggtatt
ggccgcgagcaaactcacgaacactgggttagcgtactgcgccaactgatacatctgggt
ctgttgagccaaaatattgcccaattttcggcgttacagttgactgaagcagccaggccg
gttttacgggcagaaatttctcttcaactggcggtgccgcgcattcaaagcctgaaacct
cgcagcagtgccaatcagaaatcctacggcggcaactacgaccgtaaactgtttgccaaa
ttacgcaaactacgtaagtccatcgcagatgaagaaaatattccaccttatgtcgtgttc
aatgatgcaaccttgttggaaatggctgagcagatgccgatcaaagccaacgagttgttg
agtgtcaatggtgtggggcagcgtaagctggaacgctttggtgcgccatttatggcggtg
attcgcgaccacctggataacggcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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