KEGG   Yersinia similis: BF17_05830
Entry
BF17_05830        CDS       T03057                                 
Name
(GenBank) Clp protease ClpV
  KO
K11907  type VI secretion system protein VasG
Organism
ysi  Yersinia similis
Pathway
ysi03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:ysi00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    BF17_05830
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ysi02044]
    BF17_05830
Secretion system [BR:ysi02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   BF17_05830
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA AAA_5 AAA_16 AAA_22 ClpB_D2-small AAA_7 NACHT TniB bpMoxR nSTAND3 AAA_14 RsgA_GTPase Sigma54_activat AAA_24 SLFN-g3_helicase AAA_6
Other DBs
NCBI-ProteinID: AHK18896
UniProt: A0A0T9R6D3
Position
complement(1190616..1193219)
AA seq 867 aa
MIQIDLPTLVNRLNPIARHSLEAAAAHCVSQQEAEITVSQVLLQMISTPLCDVRLILSHA
GVEEDELRESLDQRVSGYQAITQAYPSFSPLLVEWLQDSWLLASTEMEHSQLRSGVMLLT
LLLSPSRYLVPTASRLLSPINRELLRQNFANWTADSAETPRVEKGAEAGNGAEINGDSLL
ARYASNMTEQARNGELDPVLCRDTEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLAL
RIVDNQVPEKLRNSELMTLDLGALQAGAAVKGEFEKRFKGIMAEIAQSTTPIILFIDEAH
TLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEP
SAQEATIIMRGLRTVYEQAHGVLIDDEALQAAAVLSDRYISGRQLPDKAIDVLDTAAARV
AINLTSAPRQVSALKNELYHQGMEIEMLEREQRLSLSSPDERLAVLQQQRVEIEQQLIAL
NTGWEKQQHLVQQIIALRAVLLAQEERATDEQVVNLTALGDALDLLQQHQTLVSPHVDKS
QIAAVIAEWTGVPLNRLSQSELAVVTELPSYLGQQIKGQEMAIHCLHQHLLTARADLRRP
GRPMGAFLLVGPSGVGKTETVLQIAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYV
GYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNIVF
FLTSNLGYQTIVDHADEPALLNERLYPELSAFFKPALLARMEVVPYLPLGMETLQIIIHG
KLNRLDTLLRQRFSADVVIEPEVIDEILLRATRAENGARMLESIIDGALLPPVSLLLLQK
VAAGAAISHIRIAVEGNVFTAQVEGAI
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgattcaaattgacttgcccacactcgtaaaccgccttaatcccattgcccgccattct
ctggaagcggcggcggcgcattgcgtcagtcagcaggaagctgaaattacggtctcccaa
gtgctactgcaaatgatctccacaccattatgtgatgtcaggttaatcctgagccatgcg
ggtgttgaggaggatgaactacgggagtcgctcgatcaacgtgtttcaggctatcaagct
attacccaggcctacccgagtttctccccattactggtggaatggttacaagacagttgg
ttgttggcatcgacagagatggaacacagccaactccgtagtggcgtgatgttattgacg
ttattgctcagcccgtcgcgctatctggtccccacggccagccgactattatcgccgatt
aaccgtgagttactgcgtcagaattttgctaactggacggccgactcggcagaaacaccg
cgagtagaaaaaggggctgaagcaggcaacggcgcggaaatcaatggtgacagcttgctg
gcccgctatgccagcaatatgaccgaacaggcccgtaacggggaattagatcctgtgctg
tgtcgggatacagaaatcgatctgatgatcgatattctgtgccgccgccgcaaaaataac
ccgatagtggtgggtgaagcgggggtcgggaaaagtgcgctgatcgaaggtttagccctg
cgtattgtggataatcaggtgccggaaaaactgcgtaacagcgagttgatgacgctggat
ttaggcgcacttcaggctggtgcggcagtgaaaggtgaatttgagaagcgtttcaagggc
atcatggcggaaatcgcccagtccacgacgcccattatcctgtttattgatgaagcacac
acgctgatcggggccggtaaccagcagggcgggttagacatttccaatctgctcaagccc
gctttagcgcgcggtgaactgaaaactatcgcggcaaccacctggagcgaatacaaaaaa
tactttgaaaaagatgctgcgctgtcgcgccgttttcaattggtcaaagtctctgagccc
agcgcgcaagaggccacgattatcatgcgtggcctgcgtacagtttatgaacaggcgcat
ggcgtcctgatcgatgatgaagcattgcaagccgcggcggtgctcagtgaccgctatatt
tcggggcggcagttgccggacaaagccattgatgtgttggacactgcagccgcacgtgtt
gccatcaatctcacctctgcaccgcgtcaggtttcggcactgaaaaacgaactctaccat
caggggatggaaatcgagatgctggagcgggaacaacgcctcagtctaagcagcccggat
gagcggttggccgttttacaacagcagcgagtcgaaatcgaacagcaactcattgccctg
aataccggttgggaaaagcaacaacacttggtacagcagattattgcgttgagagcggtc
ctgttggcacaagaagagagagccacggatgagcaagtggtcaatctgacggcgctgggt
gacgcgctggatctgttgcaacaacaccagacgctggtctcgccgcatgtggataagagc
cagattgcggcggtgatcgctgaatggactggcgtaccgctaaaccgcctttctcagagt
gaattggcagtggtcactgaattgccctcttatctggggcagcagatcaaagggcaagag
atggctatccattgcttgcaccaacacttgctgaccgcaagggcagatttacgtcgccct
ggtcgcccaatgggggctttcctgttggttgggcctagcggcgtgggtaaaacggaaacc
gtgctacagatcgccgaactgctctatggcggccgccaatatctcaccaccatcaatatg
tccgaattccaagagaagcataccgtctcgcgcctgattggttcaccaccgggctacgtc
gggtatggtgaaggcggcgtactgaccgaagccattcgccaaaaaccttattcggtggtg
ctactggatgaagtggaaaaagctcaccccgatgtgctgaacctgttttatcaggccttc
gataaaggagagttggcagacggtgaaggccgcatcattgattgcaaaaatatcgtattt
ttcctgacctccaatctggggtaccagaccattgttgatcatgcagacgagcctgcattg
ctcaatgaacggctctaccccgagctatcggcattctttaaacctgcgctgctggcccgt
atggaagtggttccttatctgccactgggcatggaaacgctgcaaattatcattcacggc
aaactgaaccgcctggatacgctgctgcgccaacgctttagtgctgatgtggtcattgaa
ccggaagtgatcgacgaaatcctgctacgcgctacccgtgccgaaaatggtgctcgtatg
cttgagtcgattatcgacggtgcgctattaccaccggtttctctgttgttattgcagaaa
gtggccgctggcgccgctatcagccacattcggatcgcggtagaggggaatgtgtttact
gcacaggttgagggagcgatatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (26)   

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