KEGG   Ziziphus jujuba (Chinese jujube): 107407167
Entry
107407167         CDS       T04794                                 
Name
(RefSeq) sm-like protein LSM36B
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107407167
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107407167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107407167
   03041 Spliceosome [BR:zju03041]
    107407167
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107407167
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107407167
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107407167
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 107407167
NCBI-ProteinID: XP_015869890
UniProt: A0A6P3Z064
Position
1:join(47590084..47590198,47590901..47591014,47591109..47591155)
AA seq 91 aa
MSSGGEKSSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
NT seq 276 nt   +upstreamnt  +downstreamnt
atgagcagcgggggagagaaaagttccgcaactaccaaaaccccagcggatttccttaaa
tccattcgtggccgaccggttgttgtcaaactcaattctggagtggactatagaggtatt
ctagcttgtttggatgggtatatgaatatagcaatggagcagaccgaagagtatgttaat
gggcagttgaaaaataaatatggggatgcatttatccgtggaaataatgttctgtacatc
agcacatcaaagaggacattagcagatggggcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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