KEGG   Ziziphus jujuba (Chinese jujube): 107423367
Entry
107423367         CDS       T04794                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107423367
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107423367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107423367
   03041 Spliceosome [BR:zju03041]
    107423367
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107423367
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107423367
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107423367
 Complex C
  U2 snRNP components
    107423367
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF150_C
Other DBs
NCBI-GeneID: 107423367
NCBI-ProteinID: XP_015888400
UniProt: A0A6P4A0Y3
Position
3:join(28340705..28340707,28340922..28341080,28342918..28343037)
AA seq 93 aa
MLFFSYFKELVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMMSVRNC
FIRGSVVRYVQLPPEGVDVELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcgtacttcaaggagttggtcggcagagaagtgacggtggagctcaag
aacgatcttgcaatcagaggaactctgcactcggtcgatcaatatctcaacatcaagctt
gaaaacacaagggttgtcgaccaagaaaaatacccccacatgatgtcagtgaggaattgt
ttcattagaggatcagttgtgagatacgttcaactacccccagaaggagtagatgttgag
ctgctgcatgatgccaccagaagggaagctcgcggtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (31)   

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