KEGG   Zea mays (maize): 100274218
Entry
100274218         CDS       T01088                                 
Symbol
pco097024a
Name
(RefSeq) Cell division control protein 48 homolog D
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
zma  Zea mays (maize)
Pathway
zma04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100274218 (pco097024a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zma03019]
    100274218 (pco097024a)
   03009 Ribosome biogenesis [BR:zma03009]
    100274218 (pco097024a)
   04131 Membrane trafficking [BR:zma04131]
    100274218 (pco097024a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:zma04147]
    100274218 (pco097024a)
Messenger RNA biogenesis [BR:zma03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     100274218 (pco097024a)
Ribosome biogenesis [BR:zma03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    100274218 (pco097024a)
Membrane trafficking [BR:zma04131]
 SNARE
  SNARE associated proteins
   Others
    100274218 (pco097024a)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    100274218 (pco097024a)
Exosome [BR:zma04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100274218 (pco097024a)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_5 CDC48_2 AAA_33 AAA_22 AAA_14 TIP49 RNA_helicase AAA_18 AAA_17 nSTAND3 AAA_28 Mg_chelatase ATPase_2 Parvo_NS1 Vps4_C Viral_helicase1 IstB_IS21 ABC_tran Zeta_toxin NACHT AAA_7 NB-ARC AAA_24 DUF815 TsaE ResIII UFD1 Bac_DnaA SLFN-g3_helicase Sigma54_activ_2 Rad17 ATP-synt_ab Zot
Other DBs
NCBI-GeneID: 100274218
NCBI-ProteinID: NP_001347491
Position
1:complement(242562814..242567976)
AA seq 810 aa
MASQGEPSASASDPKEKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLF
RGDTVLLKGKKRKDTVCIVLADETCEEPKVRMNKVVRQNLRVRLGDVVSVHQCQDVKYGK
RVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSE
YCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSI
GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA
EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRSHVIVMGATNRPNSI
DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLELISKDTHGYVGADLAA
LCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPN
VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN
ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA
GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSR
LQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRM
KDNPEAMEEDEVDEIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSEQSATAGAAAADPFASAGAAADDDDLYS
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggcgagccaaggggagccctcggcctctgcttccgatccgaaggagaagaaggactac
tcgacggcgatactagagaggaaaaagtcaccgaaccgccttgtcgtcgacgaggccacc
aacgacgataactccgtcgtcgcactgcaccctgacaccatggagaggctgcagctcttc
cgcggcgatactgtgctcctcaagggtaagaagaggaaagacactgtttgcattgtcctt
gcggatgaaacctgtgaggagccaaaggttcggatgaacaaggttgtccgccagaacctg
agggtgaggcttggtgatgtggtttctgtccaccagtgccaggatgtgaaatatgggaag
cgtgtgcacattcttccaattgatgatacagttgaaggcattacagggaacctgtttgat
gccttcttgaaaccatacttcctagaagcatacaggcccgtgaggaaaggagaccttttc
cttgtcaggggtggaatgagaagcgtggaattcaaagtgatagagactgacccttctgaa
tattgtatcgttgccccagatactgaaatattttgtgatggggagcctattaagagagag
gatgaggagcgtcttgatgaagttggttatgatgatgttggtggagttagaaagcaaatg
gcccaaatcagagagcttgttgagcttccactacgccatcctcagcttttcaaatctatt
ggtgtgaagccaccaaagggcatattgctgtatgggccacctggttctggaaagactctt
attgctcgtgctgttgctaatgagactggagcctttttctttctgatcaatggcccagag
attatgtcgaagttagcaggagagagtgagagcaatctcagaaaggcatttgaagaagca
gagaagaatgctccatctatcattttcattgatgaaattgattccattgcacccaagaga
gaaaagaccaatggagaagtagaacgtcgtattgtttcacagctactgactcttatggat
ggactcaaatctcgttcccatgttattgttatgggtgctacaaaccggccaaacagcatc
gatcctgctcttagaagatttggaaggtttgaccgggaaattgacattggagttcctgat
gaagttggccggcttgaggttctccgtattcacactaagaacatgaagctagctgaagat
gttaatttggaactcatttcaaaggatacccatggatacgttggtgctgatcttgctgct
ctttgtactgaggctgctcttcagtgcattcgtgagaagatggacatcatagatcttgag
gatgagacaatagatgcagagatattgaactcgatggctgttacaaatgaccatttcaag
actgcgcttggaacaagcaacccatctgctctccgtgaaactgttgttgaagtcccaaat
gtctcttgggaggatattggtgggctggagaatgtcaagagggagctccaggagactgtt
caatatcctgtggaacatccagagaagttcgagaagtttggcatgtctccatccaaagga
gttctgttttatggtcctcctggttgtggtaaaaccttgttggcgaaggcaattgccaac
gagtgccaggctaacttcatcagtgtcaagggtcctgaattgcttaccatgtggtttggt
gagagtgaagccaacgtccgcgaaatttttgataaggctcgccaatctgctccttgtgtc
ctcttctttgatgagcttgactcaattgcgactcagagaggaagtagtgtgggtgatgct
ggaggcgcggctgatagagtgcttaatcagctactgaccgagatggatggcatgaacgcc
aagaaaactgtgtttattattggtgctacaaacaggcctgacatcattgatcctgctctt
ctgaggccagggcgtcttgaccagctgatctacattccactgcctgatgagcagtctagg
ctccagatcttcaaggcctgcctaaggaagtcccctgtggcaaaggatgtggacctgaat
gctcttgctaagtacacacaagggttcagtggagcagatatcacagaaatttgccagcgt
gcgtgcaaatatgcaatcagagagaacattgagaaggacattgagagggaaaggcggatg
aaggacaaccctgaggcgatggaggaagatgaagtggacgagattgccgagatcaaagca
gctcacttcgaggagtctatgaagtatgctcggcgcagtgtcagtgatgctgatatccgc
aagtaccaggcgttcgcccagacgttgcagcagtcccgtgggttcggcagcgagttccgc
ttctcagagcagtcggcgacagctggtgctgctgcagccgatccgtttgcttcggctggt
gctgcggctgacgatgacgatctatacagctag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (18)   
   RefSeq(nuc) (2)   
   GenBank (8)   
   EMBL (8)   
Protein domain (39)   
   Pfam (39)   
All databases (70)   

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