KEGG   Zea mays (maize): 100280057
Entry
100280057         CDS       T01088                                 
Name
(RefSeq) exosome complex exonuclease RRP46
  KO
K12590  exosome complex component RRP46
Organism
zma  Zea mays (maize)
Pathway
zma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100280057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zma03019]
    100280057
Messenger RNA biogenesis [BR:zma03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     100280057
SSDB
Motif
Pfam: RNase_PH RNase_PH_C DDE_3
Other DBs
NCBI-GeneID: 100280057
NCBI-ProteinID: NP_001146469
UniProt: B8A1N7
Position
5:1206430..1209629
AA seq 240 aa
MMEGGSRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPE
KASIEVVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSC
AINASCAALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSV
ESKDTTQRDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEASRDA
NT seq 723 nt   +upstreamnt  +downstreamnt
atgatggagggaggtagccgcgcggatgggcggaatccgaaccagctccggccgttcacc
tgcaccgggaacccgctccaccgcgcccacggctccgcgcggtgggcgcagggcgacacc
gtcgtgctggccgctgtgtacgggcccaagtcgggaacccggaagggcgagaaccccgag
aaggcctccatcgaggtcgtgtggaagcccaagaccggccagatcggaaggcaagagagg
gaatatgagatgacactcaagaggacgttgcagagcatctgcttgctcacagttcatcct
aacaccaccacctctgtcgtgcttcaggttgtgggtgatgatggttctcttatgtcatgt
gcaattaatgcttcttgtgctgctcttgcatttgctggaatccctatgaaacatctcgct
gtcgcgattagctgtggagtgatggacaatggtgtggttatcttagacactagcagagca
gaagagcagcaagctaggtcgtttgctcacctggtgtttccgaactcgcgcaagtcagtc
gaatcgaaggacacgacacagcgagatgaggagtccgagcgaggattgataacttgcatc
acgcatggagcaatgtccgaggatgactatttcaactgcatagagaggggtgtcatggcg
tcctcgaggatctcggatttcatgaggaagacactgcagaaggaggcttccagggatgcc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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