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GenomeNet Database Resources

DBGET: Integrated Database Retrieval System
   DBGET search
   LinkDB search     SPARQL endpoint available
KEGG: Kyoto Encyclopedia of Genes and Genomes
   KEGG2 - Table of contents
   KEGG PATHWAY - Systems information: pathways
   KEGG BRITE - Systems information: ontologies
   KEGG Organisms - Organism-specific entry points
   KEGG GENES - Genomic information
   KEGG LIGAND - Chemical information
   KEGG MEDICUS - Health information
Reaction Ontology: Reaction classifications
varDB: Antigenic variation database
Community Databases
   CYORF - Cyanobacteria annotation database
   BSORF - Bacillus subtilis genome database
   EXPRESSION - Gene expression profile database

GenomeNet Bioinformatics Tools

Sequence Analysis
   BLAST / FASTA - Sequence similarity search
   MOTIF - Sequence motif search
     NCBI-CDD is now available New!
   CLUSTALW / MAFFT / PRRN - Multiple alignment
Genome Analysis
   OC Viewer - KEGG ortholog clusters
     REST service is available
   KAAS - KEGG automatic annotation server
   MAPLE - Functionome evaluator
   EGassembler - EST consensus contigs
   GENIES - Gene network prediction
   DINIES - Drug-target network prediction
Chemical Analysis
   SIMCOMP / SUBCOMP - Chemical structure search
     REST service is available
   KCaM - Glycan structure search
   PathComp - Possible reaction path computation
   PathSearch - Similar reaction path search
   PathPred - Reaction pathway prediction
   E-zyme - Enzymatic reaction prediction


BRITE Functional Hierarchies
    KEGG Pathway Maps
    KEGG Organisms

Genome Catalogs
    Complete (KEGG GENES)
    Draft (KEGG DGENES)
    Meta (KEGG MGENES)
    Viral (KEGG VGENES)
    EST (EGENES)

Ortholog Clusters (OC)


LinkDB
Database links

DB growth curve
DB growth curve

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Kyoto University Bioinformatics Center