TRANSFAC binding site distribution matrix

tm:M00001 MyoD; 5 functional elements in 3 genes
tm:M00002 E47; 11 selected strong binding sites for E47, E47-MyoD, E12+MyoD and (weak) for E12
tm:M00003 v-Myb; 21 sites isolated from total chromatin + 3 sites from mim-1 promoter
tm:M00004 c-Myb; 9 c-Myb binding sites in SV40 DNA + 51 selected single binding sites
tm:M00005 AP-4; 5 elements from 5 genes
tm:M00006 MEF-2; 5 elements from 2 different genes (mouse/human/rat mck; rat/chicken mlc)
tm:M00007 Elk-1; 4 functional and binding elements from 4 genes
tm:M00008 Sp1; 11 sites selected by TDA
tm:M00009 Ttk 69K; 4 elements of the eve gene
tm:M00010 O2; 5 O2 target sites out of 5 maize 22-kD zein genes
tm:M00011 Evi-1; 16 sites selected from random oligonucleotides
tm:M00012 CF2-II; 80 binding sites selected from random oligonucleotides; 4th cycle
tm:M00013 CF2-II; 70 binding sites selected from random oligonucleotides; 5th cycle
tm:M00014 (repressor of CAR1 expression); 15 elements; 1 repressing element (CAR1 gene) and 14 homologous binding sites
tm:M00015 ABF1; 24 identified genomic binding sites for ABF1-related factors
tm:M00016 E74A; 17 recognition sequences selected from random oligonucleotides
tm:M00017 ATF; 25 known binding sites in 15 genes
tm:M00018 Ubx; 88 selected binding sequences
tm:M00019 Dfd; 57 selected sequences, normalized to a sum of 4 for all 4 bases in each position; central ATTA was fixed
tm:M00020 Ftz; 9 selected sequences bound by the Ftz homeo domain, ATTAAG was fixed !
tm:M00021 Kr; 6 Krueppel binding sites within the eve promoter
tm:M00022 Hb; 16 Hb binding sites within the eve promoter
tm:M00023 Hox-1.3; 10 Hox-1.3 in vitro binding sites of 10 different genes
tm:M00024 E2F; 5 E2F binding sites in 3 E1A-inducible promoters
tm:M00025 Elk-1; 31 selected sites
tm:M00026 RSRFC4; 38 selected binding sites
tm:M00027 AbaA; 22 elements from 5 developmentally regulated genes
tm:M00028 HSF; 50 functional genomic HSEs
tm:M00029 HSF; 50 functional genomic HSEs
tm:M00030 MATa1; a1 half-sites of 14 hsg operators of 4 genes
tm:M00031 MATalpha2; alpha2 half-sites of 14 hsg operators of 4 genes
tm:M00032 c-Ets-1(p54); 15 selected binding sites for bacterially expressed murine factor
tm:M00033 p300; 16 selected p300 binding oligonucleotides
tm:M00034 p53; 17 selected binding sequences
tm:M00035 v-Maf; 39 selected v-Maf binding sites of TRE-type
tm:M00036 v-Jun; 24 selected binding sites
tm:M00037 NF-E2; 9 synthetic binding sites
tm:M00038 GCN4; 43 selected GCN4-binding sites
tm:M00039 CREB; 29 selected binding oligonucleotides
tm:M00040 CRE-BP1; 47 selected binding sequences
tm:M00041 CRE-BP1/c-Jun; 43 selected binding sequences
tm:M00042 Sox-5; 23 selected binding sequences
tm:M00043 dl; 22 selected binding sequences
tm:M00044 Sn; 9 binding sites from Drosophila sim gene
tm:M00045 E4BP4; 23 selected binding sequences
tm:M00046 GCR1; 6 genomic binding sites from 5 genes
tm:M00047 qa-1F; 13 binding sites from 5 genes
tm:M00048 ADR1; 16 selected binding sequences
tm:M00049 GAL4; 11 genomic binding sites from 6 genes
tm:M00050 E2F; 12 binding sites from 7 cellular and 1 viral genes
tm:M00051 NF-kappaB (p50); 18 selected binding sequences
tm:M00052 NF-kappaB (p65); 18 selected binding sequences
tm:M00053 c-Rel; 17 selected binding sequences
tm:M00054 NF-kappaB; 40 binding sites from 30 genes (26 cellular genes and 4 viral genomes)
tm:M00055 N-Myc; 40 selected binding sequences
tm:M00056 myogenin / NF-1; 8 selected binding sequences
tm:M00057 COMP1; 7 selected binding sequences
tm:M00058 HEN1; 54 selected binding sequences
tm:M00059 YY1; 18 repressing binding sites from 7 cellular genes and 6 viral genomes
tm:M00060 Sn; 40 selected binding sequences
tm:M00061 MIG1; 14 binding sites out of 11 genes
tm:M00062 IRF-1; 21 selected binding sequences
tm:M00063 IRF-2; 15 selected binding sequences
tm:M00064 PHO4; 8 binding sites from 4 genes
tm:M00065 Tal-1beta/E47; 44 selected binding sequences
tm:M00066 Tal-1alpha/E47; 35 selected binding sequences
tm:M00067 Hairy; 29 selected binding sequences
tm:M00068 HEN1; 51 selected binding sequences
tm:M00069 YY1; 11 activating binding sites from 8 cellular genes, 1 viral genome and 2 retrotransposon elements
tm:M00070 Tal-1beta/ITF-2; 59 selected binding sequences
tm:M00071 E47; 38 selected binding sequences
tm:M00072 CP2; 6 binding sites from the murine alpha-globin gene promoter
tm:M00073 deltaEF1; 41 selected binding sequences
tm:M00074 c-Ets-1(p54); 40 selected binding sequences
tm:M00075 GATA-1; 53 selected binding sequences
tm:M00076 GATA-2; 53 selected binding sequences
tm:M00077 GATA-3; 63 selected binding sequences
tm:M00078 Evi-1; 13 selected binding sequences
tm:M00079 Evi-1; 13 selected binding sequences
tm:M00080 Evi-1; 27 selected binding sequences
tm:M00081 Evi-1; 8 selected binding sequences
tm:M00082 Evi-1; 19 selected binding sequences
tm:M00083 MZF1; 20 selected binding sequences
tm:M00084 MZF1; 16 selected binding sequences
tm:M00085 ZID; 35 selected binding sequences
tm:M00086 Ik-1; 24 selected binding sequences
tm:M00087 Ik-2; 36 selected binding sequences
tm:M00088 Ik-3; 25 selected binding sequences
tm:M00089 Athb-1; 24 selected binding sequences
tm:M00090 Abd-B; 45 selected binding sequences
tm:M00091 BR-C Z1; 9 binding sites within the Pig-1/Sgs-4 intergenic region
tm:M00092 BR-C Z2; 12 binding sites within the Pig-1/Sgs-4 intergenic region
tm:M00093 BR-C Z3; 12 binding sites within the Pig-1/Sgs-4 intergenic region
tm:M00094 BR-C Z4; 6 binding sites within the Pig-1/Sgs-4 intergenic region
tm:M00095 CDP; 18 selected binding sequences with anchored ATA trinucleotide
tm:M00096 Pbx-1; 16 selected binding sequences
tm:M00097 Pax-6; 47 selected binding sequences
tm:M00098 Pax-2; 32 selected binding sequences
tm:M00099 S8; 59 selected binding sequences
tm:M00100 CdxA; 19 selected binding sequences
tm:M00101 CdxA; 18 selected synthetic and genomic binding sequences
tm:M00102 CDP; 86 selected binding sequences
tm:M00103 Clox; 138 selected binding sequences
tm:M00104 CDP CR1; 32 selected binding sequences
tm:M00105 CDP CR3; 24 selected binding sequences
tm:M00106 CDP CR3+HD; 33 selected binding sequences
tm:M00107 E2; 17 binding sites from BPV genome
tm:M00108 NRF-2; 7 binding sites from 3 genes
tm:M00109 C/EBPbeta; 21 binding sites from 14 cellular genes and 3 viral genomes
tm:M00110 Elf-1; 5 binding sites from 2 genes
tm:M00111 CF1 / USP; 71 selected binding sequences
tm:M00112 CF1 / USP; 38 selected binding sequences
tm:M00113 CREB; 16 selected binding sequences
tm:M00114 Tax/CREB; 17 different selected binding sequences
tm:M00115 Tax/CREB; 5 different selected binding sequences
tm:M00116 C/EBPalpha; 43 binding sites from 29 genes expressed in the liver but not increasing during acute phase response
tm:M00117 C/EBPbeta; 17 binding sites from 14 genes expressed during acute phase response
tm:M00118 c-Myc/Max; 34 selected binding sequences for Myc/Max dimers
tm:M00119 Max; 37 selected binding sequences
tm:M00120 dl; 12 binding sites from 2 genes
tm:M00121 USF; 58 selected half-site sequences
tm:M00122 USF; 81 selected half-site sequences
tm:M00123 c-Myc/Max; 29 selected binding sequences
tm:M00124 Pbx1b; 40 selected binding sequences
tm:M00125 MCM1; 23 selected binding sequences
tm:M00126 GATA-1; 20 selected binding sequences
tm:M00127 GATA-1; 12 selected binding sequences
tm:M00128 GATA-1; 48 putative in vivo GATA-1 sites
tm:M00129 HFH-1; 14 selected binding sequences
tm:M00130 HFH-2; 32 selected binding sequences
tm:M00131 HNF-3beta; 24 binding sites (14 genomic sites from 11 genes plus 10 synthetic sites)
tm:M00132 HNF-1; 26 binding sites from 20 genes
tm:M00133 Tst-1; 6 binding sites in the P0 promoter
tm:M00134 HNF-4; 32 binding sites from 24 genes
tm:M00135 Oct-1; 56 selected binding sequences
tm:M00136 Oct-1; 44 selected binding sequences
tm:M00137 Oct-1; 51 selected binding sequences
tm:M00138 Oct-1; 47 selected binding sequences
tm:M00139 AhR; 9 binding sites in rat and mouse cytochrome P450 genes
tm:M00140 Bcd; 12 binding sites from 3 genes
tm:M00141 Lyf-1; 11 binding sites from 5 genes
tm:M00142 NIT2; 16 binding sites from 2 genes of Neurospora crassa and Aspergillus nidulans
tm:M00143 BSAP; 7 binding sites from 7 genes
tm:M00144 BSAP; 5 binding sites from 5 genes
tm:M00145 Brn-2; 12 binding sites from 9 vertebral and insect genes
tm:M00146 HSF1; 45 selected binding sequences
tm:M00147 HSF2; 27 selected binding sequences
tm:M00148 SRY; 23 selected binding sequences
tm:M00149 SBF-1; 6 binding sites from 2 genes
tm:M00150 Brachyury; 40 selected binding sequences
tm:M00151 AG; 66 selected binding sequences
tm:M00152 SRF; 33 selected binding sequences
tm:M00154 STRE; 17 stress-response element-related sequences from 7 stress-induced yeast genes
tm:M00155 ARP-1; 7 binding sites from 6 genes
tm:M00156 RORalpha1; 25 selected binding sequences
tm:M00157 RORalpha2; 36 selected binding sequences
tm:M00158 COUP-TF / HNF-4; 13 genomic binding sites for COUP-TF and HNF-4
tm:M00159 C/EBP; 22 binding sites from 9 viral and cellular genes
tm:M00160 SRY; 29 selected binding sequences
tm:M00161 Oct-1; 7 binding sites from 6 genes
tm:M00162 Oct-1; 6 binding sites of TAATGARAT type from 3 genes
tm:M00163 HSF; 50 functional genomic HSEs
tm:M00164 HSF; 50 functional genomic HSEs
tm:M00165 HSF; 50 functional genomic HSEs
tm:M00166 HSF; 50 functional genomic HSEs
tm:M00167 HSF; 50 functional genomic HSEs
tm:M00168 HSF; 50 functional genomic HSEs
tm:M00169 HSF; 50 functional genomic HSEs
tm:M00170 HSF; 50 functional genomic HSEs
tm:M00171 Adf-1; 11 compiled sequences
tm:M00172 AP-1; 17 compiled binding sites for AP-1, c-Jun, c-Jun/c-Fos
tm:M00173 AP-1; 14 compiled sequences
tm:M00174 AP-1; 56 compiled sequences
tm:M00175 AP-4; 7 compiled sequences
tm:M00176 AP-4; 5 compiled sequences
tm:M00177 CREB; 15 compiled sequences
tm:M00178 CREB; 20 compiled sequences
tm:M00179 CRE-BP1; 7 compiled sequences
tm:M00180 E2F; 8 compiled sequences
tm:M00181 E2; 19 compiled sequences
tm:M00182 GBP; 16 compiled sequences
tm:M00183 c-Myb; 18 compiled sequences
tm:M00184 MyoD; 14 compiled sequences
tm:M00185 NF-Y; 20 compiled sequences
tm:M00186 SRF; 21 compiled sequences
tm:M00187 USF; 12 compiled sequences
tm:M00188 AP-1; 23 compiled sequences
tm:M00189 AP-2; 13 compiled sequences
tm:M00190 C/EBP; 62 compiled sequences
tm:M00191 ER; 20 compiled sequences
tm:M00192 GR; 38 compiled sequences
tm:M00193 NF-1; 75 compiled sequences
tm:M00194 NF-kappaB; 13 compiled sequences
tm:M00195 Oct-1; 30 compiled sequences
tm:M00196 Sp1; 108 compiled sequences
tm:M00197 ABF1; total weight of sequences: 15.24
tm:M00198 GAL4; total weight of sequences: 10.53
tm:M00199 AP-1; total weight of sequences: 12.15
tm:M00200 CCAAT; total weight of sequences: 10.28
tm:M00201 C/EBP; total weight of sequences: 9.22
tm:M00202 CRP; total weight of sequences: 9.40
tm:M00203 GATA-X; total weight of sequences: 16.31
tm:M00204 GCN4; total weight of sequences: 7.70
tm:M00205 GR; total weight of sequences: 8.34
tm:M00206 HNF-1; total weight of sequences: 8.91
tm:M00207 LAC9; total weight of sequences: 6.26
tm:M00208 NF-kappaB; total weight of sequences: 22.49
tm:M00209 NF-Y; total weight of sequences: 7.07
tm:M00210 OCT-x; total weight of sequences: 10.17
tm:M00211 Poly A downstream element; total weight of sequences: 8.62
tm:M00212 Retroviral Poly A; total weight of sequences: 9.89
tm:M00213 RAP1; total weight of sequences: 14.82
tm:M00214 SEF-1; total weight of sequences: 8.13
tm:M00215 SRF; total weight of sequences: 12.86
tm:M00216 TATA; total weight of sequences: 13.36
tm:M00217 USF; total weight of sequences: 10.07
tm:M00218 MYB.Ph3; 46 selected binding sequences
tm:M00219 MYB.Ph3; 27 selected binding sequences
tm:M00220 SREBP-1; 30 selected binding sequences
tm:M00221 SREBP-1; 7 selected binding sequences
tm:M00222 Th1/E47; 29 selected binding sequences
tm:M00223 STATx; 14 genomic sequences of 14 different genes
tm:M00224 STAT1; 55 selected binding sequences
tm:M00225 STAT3; 55 selected binding sequences
tm:M00226 P; 36 selected binding sequences
tm:M00227 v-Myb; 29 selected binding sequences
tm:M00228 VBP; 18 selected binding sequences
tm:M00229 Skn-1; 19 selected binding sites revealing a GTCAT core
tm:M00230 Skn-1; 17 selected binding sites revealing a ATCAT core
tm:M00231 MEF-2; 104 selected sequences binding MEF-2 activity of skeletal muscle
tm:M00232 MEF-2; 90 selected sequences binding MEF-2 activity of heart muscle cells
tm:M00233 MEF-2; 47 selected sequences binding MEF-2 activity of brain cells
tm:M00234 Su(H); 10 binding sites within E(spl) genes
tm:M00235 AhR/Arnt; 24 selected binding sequences
tm:M00236 Arnt; 20 selected binding sequences
tm:M00237 AhR/Arnt; 25 selected binding sequences
tm:M00238 Barbie Box; 15 elements of 10 pro- and eukaryotic genes
tm:M00239 v-ErbA; 17 selected binding sequences
tm:M00240 Nkx-2.5; 6 selected binding sequences and one Nkx-2.1 consensus binding site belonging to the AAGT consensus
tm:M00241 Nkx-2.5; 5 selected binding sequences belonging to the TAAT consensus
tm:M00242 PPARalpha/RXR-alpha; 7 high-affinity binding sites of DR1 type
tm:M00243 Egr-1; selected binding sequences
tm:M00244 NGFI-C; selected binding sequences
tm:M00245 Egr-3; selected binding sequences
tm:M00246 Egr-2; selected binding sequences
tm:M00247 PacC; 5 binding sites from the ipnA gene
tm:M00248 Oct-1; 18 selected oligonucleotides
tm:M00249 CHOP-C/EBPalpha; 39 selected oligonucleotides
tm:M00250 Gfi-1; 54 selected oligonucleotides
tm:M00251 XBP-1; 33 selected oligonucleotides
tm:M00252 TATA; 389 TATA box elements
tm:M00253 cap; 303 cap sites
tm:M00254 CCAAT box; 175 CCAAT boxes of the -212/-57 region
tm:M00255 GC box; 274 GC box elements of the -164/+1 region
tm:M00256 NRSF; 28 proven binding sites of 9 genes from 12 organisms
tm:M00257 RREB-1; 11 selected binding sequences
tm:M00258 ISRE; 13 elements from 11 genes
tm:M00259 STAT; 30 selected binding sequences
tm:M00260 HLF; 18 selected binding sites
tm:M00261 Olf-1; 8 genomic binding sites from 5 genes
tm:M00262 Staf; 73 selected binding sequences
tm:M00263 StuAp; 9 binding sites found in 5 genes
tm:M00264 Staf; 10 genomic binding sites from 4 pol II and 5 pol III genes
tm:M00266 Croc; 15 selected binding sequences
tm:M00267 XFD-1; 6 selected sequences
tm:M00268 XFD-2; 6 selected sequences
tm:M00269 XFD-3; 6 selected sequences
tm:M00270 GCM; 48 selected sequences
tm:M00271 AML-1a; 56 suggested binding sites contained in 38 selected sequences
tm:M00272 p53; 20 genomic binding sites
tm:M00273 R; 35 selected sequences
tm:M00274 STE11; 17 genomic sites of 9 genes
tm:M00275 Mat1-Mc; 6 genomic sites of 3 genes
tm:M00276 Mat1-Mc; 10 elements of 6 genes
tm:M00277 Lmo2 complex; 31 selected binding sequences
tm:M00278 Lmo2 complex; 31 selected binding sequences
tm:M00279 MIF-1; 6 elements of 4 viral and 2 cellular regulatory regions
tm:M00280 RFX1; 32 selected binding sequences, two half-site matrices joined by 1-nucleotide spacing deduced from 12 sequences
tm:M00281 RFX1; 32 selected binding sequences, two half-site matrices joined by 2-nucleotide spacing deduced from 12 sequences
tm:M00283 Zeste; 26 genomic binding sites [2]
tm:M00284 TCF11/MafG; 14 selected binding sequences
tm:M00285 TCF11; 31 selected binding sequences (half-sites!)
tm:M00286 GKLF; 49 selected binding sequences
tm:M00287 NF-Y; 164 compiled binding sites
tm:M00288 HAP2/3/4; 14 compiled sequences
tm:M00289 HFH-3; 31 high affinity binding sequences
tm:M00290 Freac-2; 27 oligonucelotides
tm:M00291 Freac-3; 16 oligonucleotides
tm:M00292 Freac-4; 20 oligonucletides
tm:M00293 Freac-7; 23 oligonucleotides
tm:M00294 HFH-8; 48 ( ! high affinity ! ) binding oligonucleotides
tm:M00302 NF-AT; 26 NF-ATp/c binding sites
tm:M00343 RAV1; 69 selected binding sequences with the 3'-part (P$RAV1_02) in a 2-8 bp distance (no of intervening base pairs)
tm:M00344 RAV1; 65 selected binding sequences with the 5'-part (P$RAV1_01) in a 2-8 bp distance (no of intervening base pairs)
tm:M00345 GAmyb; 25 selected binding sequences
tm:M00346 GATA-1; 10 selected binding sequences
tm:M00347 GATA-1; 15 selected binding sequences
tm:M00348 GATA-2; 31 selected binding sequences
tm:M00349 GATA-2; 18 selected binding sequences
tm:M00350 GATA-3; 41 selected binding sequences
tm:M00351 GATA-3; 26 selected binding sequences
tm:M00352 Dof1; 15 selected binding sequences
tm:M00353 Dof2; 21 selected binding sequences
tm:M00354 Dof3; 21 selected binding sequences
tm:M00355 PBF; 16 selected binding sequences
tm:M00356 bZIP910; 18 selected binding sequences
tm:M00357 bZIP910; 17 selected binding sequences
tm:M00358 bZIP911; 22 selected binding sequences
tm:M00359 bZIP911; 10 selected binding sequences