KEGG GENES

Selected Organisms

Current selection: GENES (Eukaryotes: 151 Prokaryotes: 1519)	New selection

Eukaryotes

Category			Organism
Animals	Vertebrates	Mammals	Homo sapiens (human)	hsa
			Pan troglodytes (chimpanzee)	ptr
			Pongo abelii (Sumatran orangutan)	pon
			Macaca mulatta (rhesus monkey)	mcc
			Mus musculus (mouse)	mmu
			Rattus norvegicus (rat)	rno
			Canis familiaris (dog)	cfa
			Ailuropoda melanoleuca (giant panda)	aml
			Bos taurus (cow)	bta
			Sus scrofa (pig)	ssc
			Equus caballus (horse)	ecb
			Monodelphis domestica (opossum)	mdo
			Ornithorhynchus anatinus (platypus)	oaa
		Birds	Gallus gallus (chicken)	gga
			Meleagris gallopavo (turkey)	mgp
			Taeniopygia guttata (zebra finch)	tgu
		Reptiles	Anolis carolinensis (green anole)	acs
		Amphibians	Xenopus laevis (African clawed frog)	xla
		Amphibians	Xenopus tropicalis (western clawed frog)	xtr
		Fishes	Danio rerio (zebrafish)	dre
	Lancelets		Branchiostoma floridae (Florida lancelet)	bfo
	Ascidians		Ciona intestinalis (sea squirt)	cin
	Echinoderms		Strongylocentrotus purpuratus (purple sea urchin)	spu
	Arthropods	Insects	Drosophila melanogaster (fruit fly)	dme
			Drosophila pseudoobscura pseudoobscura	dpo
			Drosophila ananassae	dan
			Drosophila erecta	der
			Drosophila persimilis	dpe
			Drosophila sechellia	dse
			Drosophila simulans	dsi
			Drosophila willistoni	dwi
			Drosophila yakuba	dya
			Drosophila grimshawi	dgr
			Drosophila mojavensis	dmo
			Drosophila virilis	dvi
			Anopheles gambiae (mosquito)	aga
			Aedes aegypti (yellow fever mosquito)	aag
			Culex quinquefasciatus (southern house mosquito)	cqu
			Apis mellifera (honey bee)	ame
			Nasonia vitripennis (jewel wasp)	nvi
			Tribolium castaneum (red flour beetle)	tca
			Acyrthosiphon pisum (pea aphid)	api
			Pediculus humanus corporis (human body louse)	phu
		Mites and ticks	Ixodes scapularis (black-legged tick)	isc
	Nematodes		Caenorhabditis elegans (nematode)	cel
			Caenorhabditis briggsae	cbr
			Brugia malayi (filaria)	bmy
			Trichinella spiralis	tsp
	Flatworms		Schistosoma mansoni	smm
	Cnidarians		Nematostella vectensis (sea anemone)	nve
	Cnidarians		Hydra magnipapillata	hmg
	Placozoans		Trichoplax adhaerens	tad
Plants	Eudicots	Mustard family	Arabidopsis thaliana (thale cress)	ath
		Mustard family	Arabidopsis lyrata (lyrate rockcress)	aly
		Willow family	Populus trichocarpa (black cottonwood)	pop
		Spurge family	Ricinus communis (castor bean)	rcu
		Grape family	Vitis vinifera (wine grape)	vvi
	Monocots	Grass family	Oryza sativa japonica (Japanese rice)	osa
			Sorghum bicolor (sorghum)	sbi
			Zea mays (maize)	zma
	Ferns		Selaginella moellendorffii	smo
	Mosses		Physcomitrella patens subsp. patens	ppp
	Green algae		Chlamydomonas reinhardtii	cre
			Volvox carteri f. nagariensis	vcn
			Ostreococcus lucimarinus	olu
			Ostreococcus tauri	ota
	Red algae		Cyanidioschyzon merolae	cme
Fungi	Ascomycetes	Saccharomycetes	Saccharomyces cerevisiae (budding yeast)	sce
			Ashbya gossypii (Eremothecium gossypii)	ago
			Kluyveromyces lactis	kla
			Lachancea thermotolerans	lth
			Pichia pastoris	ppa
			Vanderwaltozyma polyspora	vpo
			Zygosaccharomyces rouxii	zro
			Candida glabrata	cgr
			Debaryomyces hansenii	dha
			Scheffersomyces stipitis	pic
			Meyerozyma guilliermondii	pgu
			Lodderomyces elongisporus	lel
			Candida albicans	cal
			Candida tropicalis	ctp
			Candida dubliniensis	cdu
			Yarrowia lipolytica	yli
			Clavispora lusitaniae	clu
		Sordariomycetes	Neurospora crassa	ncr
			Sordaria macrospora	smp
			Podospora anserina	pan
			Magnaporthe oryzae	mgr
			Fusarium graminearum	fgr
			Nectria haematococca	nhe
		Leotiomycetes	Sclerotinia sclerotiorum	ssl
		Leotiomycetes	Botryotinia fuckeliana	bfu
		Eurotiomycetes	Aspergillus nidulans	ani
			Aspergillus fumigatus	afm
			Neosartorya fischeri	nfi
			Aspergillus oryzae	aor
			Aspergillus niger	ang
			Aspergillus flavus	afv
			Aspergillus clavatus	act
			Penicillium chrysogenum	pcs
			Coccidioides immitis	cim
			Coccidioides posadasii	cpw
			Uncinocarpus reesii	ure
			Arthroderma benhamiae	abe
			Trichophyton verrucosum	tve
		Dothideomycetes	Phaeosphaeria nodorum	pno
		Dothideomycetes	Pyrenophora teres	pte
		Pezizomycetes	Tuber melanosporum	tml
		Schizosaccharomycetes	Schizosaccharomyces pombe (fission yeast)	spo
	Basidiomycetes		Cryptococcus neoformans JEC21	cne
			Cryptococcus neoformans B-3501A	cnb
			Postia placenta	ppl
			Laccaria bicolor	lbc
			Moniliophthora perniciosa	mpr
			Coprinopsis cinerea	cci
			Schizophyllum commune	scm
			Ustilago maydis	uma
			Malassezia globosa	mgl
	Microsporidians		Encephalitozoon cuniculi	ecu
	Microsporidians		Nosema ceranae	nce
Protists	Choanoflagellates		Monosiga brevicollis	mbr
	Amoeboflagellate		Naegleria gruberi	ngr
	Amoebozoa	Dictyostelium	Dictyostelium discoideum (cellular slime mold)	ddi
		Entamoeba	Entamoeba histolytica	ehi
		Entamoeba	Entamoeba dispar	edi
	Alveolates	Apicomplexans	Plasmodium falciparum 3D7	pfa
			Plasmodium falciparum Dd2	pfd
			Plasmodium falciparum HB3	pfh
			Plasmodium yoelii	pyo
			Plasmodium chabaudi	pcb
			Plasmodium berghei	pbe
			Plasmodium knowlesi	pkn
			Plasmodium vivax	pvx
			Theileria annulata	tan
			Theileria parva	tpv
			Babesia bovis	bbo
			Cryptosporidium parvum	cpv
			Cryptosporidium hominis	cho
			Toxoplasma gondii	tgo
		Ciliates	Tetrahymena thermophila	tet
		Ciliates	Paramecium tetraurelia	ptm
	Euglenozoa	Kinetoplasts	Trypanosoma brucei	tbr
			Trypanosoma cruzi	tcr
			Leishmania major	lma
			Leishmania infantum	lif
			Leishmania braziliensis	lbz
	Diplomonads		Giardia lamblia	gla
	Parabasalids		Trichomonas vaginalis	tva
	Diatoms		Phaeodactylum tricornutum	pti
	Diatoms		Thalassiosira pseudonana	tps
	Oomycetes		Phytophthora infestans	pif

Prokaryotes

Category				Organism
Bacteria	Gammaproteobacteria	Escherichia		Escherichia coli K-12 MG1655	eco
				Escherichia coli K-12 W3110	ecj
				Escherichia coli K-12 DH10B	ecd
				Escherichia coli K-12 MC4100(MuLac) BW2952	ebw
				Escherichia coli O157:H7 EDL933 (EHEC)	ece
				Escherichia coli O157:H7 Sakai (EHEC)	ecs
				Escherichia coli O157:H7 EC4115 (EHEC)	ecf
				Escherichia coli O157:H7 TW14359 (EHEC)	etw
				Escherichia coli O26:H11 11368 (EHEC)	eoj
				Escherichia coli O111:H- 11128 (EHEC)	eoi
				Escherichia coli O103:H2 12009 (EHEC)	eoh
				Escherichia coli O127:H6 E2348/69 (EPEC)	ecg
				Escherichia coli O55:H7 CB9615 (EPEC)	eok
				Escherichia coli O6:K2:H1 CFT073 (UPEC)	ecc
				Escherichia coli O6:K15:H31 536 (UPEC)	ecp
				Escherichia coli O18:K1:H7 UTI89 (UPEC)	eci
				Escherichia coli O1:K1:H7 (APEC)	ecv
				Escherichia coli O9 HS (commensal)	ecx
				Escherichia coli O139:H28 E24377A (ETEC)	ecw
				Escherichia coli SMS-3-5 (environmental)	ecm
				Escherichia coli O152:H28 SE11 (commensal)	ecy
				Escherichia coli O8 IAI1 (commensal)	ecr
				Escherichia coli O81 ED1a (commensal)	ecq
				Escherichia coli 55989 (EAEC)	eck
				Escherichia coli O7:K1 IAI39 (ExPEC)	ect
				Escherichia coli O17:K52:H18 UMN026 (ExPEC)	eum
				Escherichia coli O45:K1:H7 S88 (ExPEC)	ecz
				Escherichia coli C ATCC 8739	ecl
				Escherichia coli B REL606	ebr
				Escherichia coli BL21-Gold(DE3)pLysS AG	ebd
				Escherichia fergusonii	efe
		Salmonella		Salmonella enterica subsp. enterica serovar Typhi CT18	sty
				Salmonella enterica subsp. enterica serovar Typhi Ty2	stt
				Salmonella enterica subsp. enterica serovar Typhimurium LT2	stm
				Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150	spt
				Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601	sek
				Salmonella enterica subsp. enterica serovar Paratyphi B	spq
				Salmonella enterica subsp. enterica serovar Paratyphi C	sei
				Salmonella enterica subsp. enterica serovar Choleraesuis	sec
				Salmonella enterica subsp. enterica serovar Heidelberg	seh
				Salmonella enterica subsp. enterica serovar Newport	see
				Salmonella enterica subsp. enterica serovar Schwarzengrund	sew
				Salmonella enterica subsp. enterica serovar Agona	sea
				Salmonella enterica subsp. enterica serovar Dublin	sed
				Salmonella enterica subsp. enterica serovar Gallinarum	seg
				Salmonella enterica subsp. enterica serovar Enteritidis	set
				Salmonella enterica subsp. arizonae	ses
				Salmonella bongori	sbg
		Yersinia		Yersinia pestis CO92 (biovar Orientalis)	ype
				Yersinia pestis KIM 10 (biovar Mediaevalis)	ypk
				Yersinia pestis Antiqua (biovar Antiqua)	ypa
				Yersinia pestis Nepal516 (biovar Antiqua)	ypn
				Yersinia pestis 91001 (biovar Microtus)	ypm
				Yersinia pestis Pestoides F	ypp
				Yersinia pestis Angola	ypg
				Yersinia pestis Z176003	ypz
				Yersinia pseudotuberculosis IP32953 (serotype I)	yps
				Yersinia pseudotuberculosis IP31758 (serotype O:1b)	ypi
				Yersinia pseudotuberculosis YPIII	ypy
				Yersinia pseudotuberculosis PB1/+	ypb
				Yersinia enterocolitica subsp. enterocolitica 8081	yen
				Yersinia enterocolitica subsp. palearctica 105.5R(r)	yep
		Shigella		Shigella flexneri 301 (serotype 2a)	sfl
				Shigella flexneri 2457T (serotype 2a)	sfx
Shigella flexneri 8401 (serotype 5b)	sfv
Shigella sonnei	ssn
Shigella boydii Sb227	sbo
Shigella boydii CDC 3083-94	sbc
Shigella dysenteriae	sdy
Pectobacterium		Pectobacterium atrosepticum	eca
		Pectobacterium carotovorum	pct
		Pectobacterium wasabiae	pwa
Erwinia		Erwinia tasmaniensis	eta
		Erwinia pyrifoliae	epy
		Erwinia amylovora CFBP1430	eam
		Erwinia amylovora ATCC 49946	eay
		Erwinia billingiae	ebi
Photorhabdus		Photorhabdus luminescens	plu
Photorhabdus		Photorhabdus asymbiotica	pay
Buchnera		Buchnera aphidicola APS	buc
		Buchnera aphidicola Sg	bas
		Buchnera aphidicola Bp	bab
		Buchnera aphidicola Cc	bcc
		Buchnera aphidicola 5A	bap
		Buchnera aphidicola Tuc7	bau
		Buchnera aphidicola (Cinara tujafilina)	baj
Wigglesworthia		Wigglesworthia glossinidia	wbr
Sodalis		Sodalis glossinidius	sgl
Enterobacter		Enterobacter sp. 638	ent
		Enterobacter cloacae subsp. cloacae ATCC 13047	enc
		Enterobacter cloacae SCF1	esc
		Enterobacter cloacae EcWSU1	eec
		Enterobacter asburiae	eas
		Enterobacter aerogenes	eae
Cronobacter		Cronobacter sakazakii	esa
Cronobacter		Cronobacter turicensis	ctu
Klebsiella		Klebsiella pneumoniae	kpn
		Klebsiella pneumoniae 342	kpe
		Klebsiella pneumoniae NTUH-K2044	kpu
		Klebsiella variicola	kva
Citrobacter		Citrobacter koseri ATCC BAA-895	cko
Citrobacter		Citrobacter rodentium	cro
Serratia		Serratia proteamaculans	spe
		Serratia sp. AS12	srs
		Serratia sp. AS9	srr
		Serratia symbiotica	ssz
Proteus		Proteus mirabilis	pmr
Edwardsiella		Edwardsiella ictaluri	eic
Edwardsiella		Edwardsiella tarda	etr
Blochmannia		Candidatus Blochmannia floridanus	bfl
		Candidatus Blochmannia pennsylvanicus	bpn
		Candidatus Blochmannia vafer	bva
Hamiltonella		Candidatus Hamiltonella defensa	hde
Dickeya		Dickeya dadantii Ech703	dda
		Dickeya dadantii Ech586	ddc
		Dickeya dadantii 3937	ddd
		Dickeya zeae	dze
Xenorhabdus		Xenorhabdus bovienii	xbo
Xenorhabdus		Xenorhabdus nematophila	xne
Pantoea		Pantoea ananatis	pam
		Pantoea vagans	pva
		Pantoea sp. At-9b	pao
Riesia		Candidatus Riesia pediculicola	rip
Rahnella		Rahnella sp. Y9602	rah
Moranella		Candidatus Moranella endobia	men
Haemophilus		Haemophilus influenzae Rd KW20 (serotype d)	hin
		Haemophilus influenzae 86-028NP (nontypeable)	hit
		Haemophilus influenzae PittEE	hip
		Haemophilus influenzae PittGG	hiq
		Haemophilus influenzae F3031	hif
		Haemophilus influenzae F3047	hil
		Haemophilus ducreyi	hdu
		Haemophilus parasuis	hap
		Haemophilus parainfluenzae	hpr
Histophilus		Haemophilus somnus 129PT	hso
Histophilus		Haemophilus somnus 2336	hsm
Pasteurella		Pasteurella multocida	pmu
Mannheimia		Mannheimia succiniciproducens	msu
Actinobacillus		Actinobacillus pleuropneumoniae L20 (serotype 5b)	apl
		Actinobacillus pleuropneumoniae JL03 (serotype 3)	apj
		Actinobacillus pleuropneumoniae AP76 (serotype 7)	apa
		Actinobacillus succinogenes	asu
Aggregatibacter		Aggregatibacter aphrophilus	aap
		Aggregatibacter actinomycetemcomitans D11S-1	aat
		Aggregatibacter actinomycetemcomitans ANH9381	aao
Gallibacterium		Gallibacterium anatis	gan
Xylella		Xylella fastidiosa 9a5c	xfa
		Xylella fastidiosa Temecula1	xft
		Xylella fastidiosa M12	xfm
		Xylella fastidiosa M23	xfn
Xanthomonas		Xanthomonas campestris pv. campestris ATCC 33913	xcc
		Xanthomonas campestris pv. campestris 8004	xcb
		Xanthomonas campestris pv. campestris B100	xca
		Xanthomonas campestris pv. vesicatoria	xcv
		Xanthomonas axonopodis pv. citri 306	xac
		Xanthomonas axonopodis pv. citrumelo F1	xax
		Xanthomonas oryzae KACC10331	xoo
		Xanthomonas oryzae MAFF311018	xom
		Xanthomonas oryzae PXO99A	xop
		Xanthomonas albilineans	xal
Stenotrophomonas		Stenotrophomonas maltophilia K279a	sml
Stenotrophomonas		Stenotrophomonas maltophilia R551-3	smt
Pseudoxanthomonas		Pseudoxanthomonas suwonensis	psu
Pseudoxanthomonas		Pseudoxanthomonas spadix	psd
Vibrio		Vibrio cholerae O1 biovar El Tor N16961	vch
		Vibrio cholerae O1 2010EL-1786	vce
		Vibrio cholerae O395	vco
		Vibrio cholerae M66-2	vcm
		Vibrio cholerae MJ-1236	vcj
		Vibrio vulnificus CMCP6	vvu
		Vibrio vulnificus YJ016	vvy
		Vibrio vulnificus MO6-24/O	vvm
		Vibrio parahaemolyticus	vpa
		Vibrio harveyi	vha
		Vibrio splendidus	vsp
		Vibrio sp. Ex25	vex
Aliivibrio		Vibrio fischeri	vfi
		Vibrio fischeri MJ11	vfm
		Aliivibrio salmonicida LFI1238	vsa
Photobacterium		Photobacterium profundum	ppr
Listonella		Vibrio anguillarum	van
Pseudomonas		Pseudomonas aeruginosa PAO1	pae
		Pseudomonas aeruginosa UCBPP-PA14	pau
		Pseudomonas aeruginosa PA7	pap
		Pseudomonas aeruginosa LESB58	pag
		Pseudomonas putida KT2440	ppu
		Pseudomonas putida F1	ppf
		Pseudomonas putida GB-1	ppg
		Pseudomonas putida W619	ppw
		Pseudomonas putida S16	ppt
		Pseudomonas syringae pv. tomato DC3000	pst
		Pseudomonas syringae pv. syringae B728a	psb
		Pseudomonas syringae pv. phaseolicola 1448A	psp
		Pseudomonas fluorescens Pf-5	pfl
		Pseudomonas fluorescens Pf0-1	pfo
		Pseudomonas fluorescens SBW25	pfs
		Pseudomonas entomophila	pen
		Pseudomonas mendocina ymp	pmy
		Pseudomonas mendocina NK-01	pmk
		Pseudomonas stutzeri	psa
		Pseudomonas stutzeri ATCC 17588	psz
		Pseudomonas brassicacearum	pba
		Pseudomonas fulva	pfv
Cellvibrio		Cellvibrio japonicus	cja
Cellvibrio		Cellvibrio gilvus	cga
Azotobacter		Azotobacter vinelandii	avn
Psychrobacter		Psychrobacter arcticum	par
		Psychrobacter cryohalolentis	pcr
		Psychrobacter sp. PRwf-1	prw
Acinetobacter		Acinetobacter sp. ADP1	aci
		Acinetobacter sp. DR1	acd
		Acinetobacter baumannii ATCC 17978	acb
		Acinetobacter baumannii SDF	abm
		Acinetobacter baumannii AYE	aby
		Acinetobacter baumannii ACICU	abc
		Acinetobacter baumannii AB0057	abn
		Acinetobacter baumannii AB307-0294	abb
Moraxella		Moraxella catarrhalis	mct
Shewanella		Shewanella oneidensis	son
		Shewanella denitrificans	sdn
		Shewanella frigidimarina	sfr
		Shewanella amazonensis	saz
		Shewanella baltica OS155	sbl
		Shewanella baltica OS185	sbm
		Shewanella baltica OS195	sbn
		Shewanella baltica OS223	sbp
		Shewanella loihica	slo
		Shewanella putrefaciens	spc
		Shewanella sediminis	sse
		Shewanella pealeana	spl
		Shewanella sp. MR-4	she
		Shewanella sp. MR-7	shm
		Shewanella sp. ANA-3	shn
		Shewanella sp. W3-18-1	shw
		Shewanella halifaxensis	shl
		Shewanella woodyi ATCC 51908	swd
		Shewanella piezotolerans WP3	swp
		Shewanella violacea	svo
Idiomarina		Idiomarina loihiensis	ilo
Colwellia		Colwellia psychrerythraea	cps
Pseudoalteromonas		Pseudoalteromonas haloplanktis	pha
		Pseudoalteromonas atlantica	pat
		Pseudoalteromonas sp. SM9913	psm
Saccharophagus		Saccharophagus degradans	sde
Marinobacter		Marinobacter aquaeolei	maq
Alteromonas		Alteromonas macleodii	amc
Alteromonas		Alteromonas sp. SN2	alt
Glaciecola		Glaciecola sp. 4H-3-7+YE-5	gag
Glaciecola		Glaciecola nitratireducens	gni
Psychromonas		Psychromonas ingrahamii	pin
Teredinibacter		Teredinibacter turnerae	ttu
Ferrimonas		Ferrimonas balearica	fbl
Coxiella		Coxiella burnetii RSA 493	cbu
		Coxiella burnetii RSA 331	cbs
		Coxiella burnetii Dugway 5J108-111	cbd
		Coxiella burnetii CbuG_Q212	cbg
		Coxiella burnetii CbuK_Q154	cbc
Legionella		Legionella pneumophila Philadelphia 1	lpn
		Legionella pneumophila Lens	lpf
		Legionella pneumophila Paris	lpp
		Legionella pneumophila Corby	lpc
		Legionella pneumophila 2300/99 Alcoy	lpa
		Legionella longbeachae	llo
Methylococcus		Methylococcus capsulatus	mca
Methylomonas		Methylomonas methanica	mmt
Methylomicrobium		Methylomicrobium alcaliphilum	mah
Francisella		Francisella tularensis subsp. tularensis SCHU S4	ftu
		Francisella tularensis subsp. tularensis FSC 198	ftf
		Francisella tularensis subsp. tularensis WY96-3418	ftw
		Francisella tularensis subsp. holarctica LVS	ftl
		Francisella tularensis subsp. holarctica OSU18	fth
		Francisella tularensis subsp. holarctica FTNF002-00	fta
		Francisella tularensis subsp. mediasiatica FSC147	ftm
		Francisella novicida U112	ftn
		Francisella philomiragia	fph
		Francisella sp. TX077308	frt
Thiomicrospira		Thiomicrospira crunogena	tcx
Thioalkalimicrobium		Thioalkalimicrobium cyclicum	tcy
Nitrosococcus		Nitrosococcus oceani	noc
		Nitrosococcus halophilus	nhl
		Nitrosococcus watsonii	nwa
Allochromatium		Allochromatium vinosum	alv
Alkalilimnicola		Alkalilimnicola ehrlichei	aeh
Halorhodospira		Halorhodospira halophila	hha
Thioalkalivibrio		Thioalkalivibrio sp. HL-EbGR7	tgr
Thioalkalivibrio		Thioalkalivibrio sp. K90mix	tkm
Halothiobacillus		Halothiobacillus neapolitanus	hna
Hahella		Hahella chejuensis	hch
Chromohalobacter		Chromohalobacter salexigens	csa
Halomonas		Halomonas elongata	hel
Alcanivorax		Alcanivorax borkumensis	abo
Kangiella		Kangiella koreensis	kko
Marinomonas		Marinomonas sp. MWYL1	mmw
		Marinomonas mediterranea	mme
		Marinomonas posidonica	mpc
Aeromonas		Aeromonas hydrophila	aha
		Aeromonas salmonicida	asa
		Aeromonas veronii	avr
Tolumonas		Tolumonas auensis	tau
Oceanimonas		Oceanimonas sp. GK1	oce
Dichelobacter		Dichelobacter nodosus	dno
Acidithiobacillus		Acidithiobacillus ferrooxidans ATCC 53993	afe
		Acidithiobacillus ferrooxidans ATCC 23270	afr
		Acidithiobacillus caldus	acu
		Acidithiobacillus ferrivorans	afi
Baumannia		Baumannia cicadellinicola	bci
Carsonella		Candidatus Carsonella ruddii	crp
Ruthia		Candidatus Ruthia magnifica	rma
Vesicomyosocius		Candidatus Vesicomyosocius okutanii	vok
Unclassified Gammaproteobacteria		Gamma proteobacterium HdN1	gpb
Betaproteobacteria	Neisseria		Neisseria meningitidis Z2491 (serogroup A)	nma
			Neisseria meningitidis MC58 (serogroup B)	nme
			Neisseria meningitidis FAM18 (serogroup C)	nmc
			Neisseria meningitidis 053442 (serogroup C)	nmn
			Neisseria meningitidis alpha14	nmi
			Neisseria gonorrhoeae FA 1090	ngo
			Neisseria gonorrhoeae NCCP11945	ngk
			Neisseria lactamica	nla
	Chromobacterium		Chromobacterium violaceum	cvi
	Laribacter		Laribacter hongkongensis	lhk
	Pseudogulbenkiania		Pseudogulbenkiania sp. NH8B	pse
	Ralstonia		Ralstonia solanacearum GMI1000	rso
			Ralstonia solanacearum CFBP2957	rsc
			Ralstonia solanacearum PSI07	rsl
			Ralstonia pickettii 12J	rpi
			Ralstonia pickettii 12D	rpf
	Cupriavidus		Ralstonia eutropha JMP134	reu
			Ralstonia eutropha H16	reh
			Cupriavidus metallidurans	rme
			Cupriavidus taiwanensis	cti
			Cupriavidus necator	cnc
	Burkholderia		Burkholderia mallei ATCC 23344	bma
			Burkholderia mallei SAVP1	bmv
			Burkholderia mallei NCTC 10229	bml
			Burkholderia mallei NCTC 10247	bmn
			Burkholderia pseudomallei K96243	bps
			Burkholderia pseudomallei 1710b	bpm
			Burkholderia pseudomallei 1106a	bpl
			Burkholderia pseudomallei 668	bpd
			Burkholderia pseudomallei MSHR346	bpr
			Burkholderia thailandensis	bte
			Burkholderia vietnamiensis	bvi
			Burkholderia sp. 383	bur
			Burkholderia cenocepacia AU1054	bcn
			Burkholderia cenocepacia HI2424	bch
			Burkholderia cenocepacia MC0-3	bcm
			Burkholderia cenocepacia J2315	bcj
			Burkholderia ambifaria AMMD	bam
			Burkholderia ambifaria MC40-6	bac
			Burkholderia multivorans ATCC 17616 (JGI)	bmu
			Burkholderia multivorans ATCC 17616 (Tohoku)	bmj
			Burkholderia xenovorans	bxe
			Burkholderia phymatum	bph
			Burkholderia phytofirmans	bpy
			Burkholderia glumae	bgl
			Burkholderia sp. CCGE1001	bug
			Burkholderia sp. CCGE1002	bge
			Burkholderia sp. CCGE1003	bgf
			Burkholderia rhizoxinica	brh
			Burkholderia gladioli	bgd
			Stenotrophomonas maltophilia JV3	buj
	Polynucleobacter		Polynucleobacter sp. QLW-P1DMWA-1	pnu
	Polynucleobacter		Polynucleobacter necessarius	pne
	Bordetella		Bordetella pertussis	bpe
			Bordetella parapertussis	bpa
			Bordetella bronchiseptica	bbr
			Bordetella petrii	bpt
			Bordetella avium	bav
	Achromobacter		Achromobacter xylosoxidans	axy
	Taylorella		Taylorella equigenitalis	teq
	Taylorella		Taylorella asinigenitalis	tas
	Pusillimonas		Pusillimonas sp. T7-7	put
	Rhodoferax		Rhodoferax ferrireducens	rfr
	Polaromonas		Polaromonas sp. JS666	pol
Polaromonas naphthalenivorans	Polaromonas		pna
Acidovorax		Acidovorax avenae	aav
		Acidovorax sp. JS42	ajs
		Acidovorax ebreus	dia
		Acidovorax avenae subsp. avenae ATCC 19860	aaa
Verminephrobacter		Verminephrobacter eiseniae	vei
Delftia		Delftia acidovorans	dac
Delftia		Delftia sp. Cs1-4	del
Variovorax		Variovorax paradoxus S110	vap
Variovorax		Variovorax paradoxus EPS	vpe
Comamonas		Comamonas testosteroni	ctt
Alicycliphilus		Alicycliphilus denitrificans BC	adn
Alicycliphilus		Alicycliphilus denitrificans K601	adk
Ramlibacter		Ramlibacter tataouinensis	rta
Methylibium		Methylibium petroleiphilum	mpt
Herminiimonas		Herminiimonas arsenicoxydans	har
Minibacterium		Minibacterium massiliensis	mms
Herbaspirillum		Herbaspirillum seropedicae	hse
Zinderia		Candidatus Zinderia insecticola CARI	zin
Collimonas		Collimonas fungivorans	cfu
Leptothrix		Leptothrix cholodnii	lch
Thiomonas		Thiomonas intermedia	tin
Nitrosomonas		Nitrosomonas europaea	neu
		Nitrosomonas eutropha	net
		Nitrosomonas sp. AL212	nit
		Nitrosomonas sp. Is79A3	nii
Nitrosospira		Nitrosospira multiformis	nmu
Aromatoleum		Aromatoleum aromaticum EbN1	eba
Azoarcus		Azoarcus sp. BH72	azo
Dechloromonas		Dechloromonas aromatica	dar
Thauera		Thauera sp. MZ1T	tmz
Azospira		Dechlorosoma suillum	dsu
Thiobacillus		Thiobacillus denitrificans	tbd
Methylobacillus		Methylobacillus flagellatus	mfa
Methylotenera		Methylotenera mobilis	mmb
Methylotenera		Methylotenera sp. 301	meh
Methylovorus		Methylovorus glucosetrophus SIP3-4	mei
Methylovorus		Methylovorus sp. MP688	mep
Accumulibacter		Accumulibacter phosphatis	app
Tremblaya		Candidatus Tremblaya princeps	tpn
Sideroxydans		Sideroxydans lithotrophicus	slt
Gallionella		Gallionella capsiferriformans	gca
Epsilonproteobacteria	Helicobacter		Helicobacter pylori 26695	hpy
			Helicobacter pylori J99	hpj
			Helicobacter pylori HPAG1	hpa
			Helicobacter pylori Shi470	hps
			Helicobacter pylori G27	hpg
			Helicobacter pylori P12	hpp
			Helicobacter pylori B38	hpb
			Helicobacter pylori B8	hpl
			Helicobacter pylori PeCan4	hpc
			Helicobacter pylori SJM180	hpm
			Helicobacter hepaticus	hhe
			Helicobacter acinonychis	hac
			Helicobacter mustelae	hms
			Helicobacter felis	hfe
			Helicobacter bizzozeronii	hbi
	Wolinella		Wolinella succinogenes	wsu
	Sulfurimonas		Sulfurimonas denitrificans	tdn
	Sulfurimonas		Sulfurimonas autotrophica	sua
	Sulfuricurvum		Sulfuricurvum kujiense	sku
	Campylobacter		Campylobacter jejuni NCTC11168	cje
			Campylobacter jejuni RM1221	cjr
			Campylobacter jejuni 81-176	cjj
			Campylobacter jejuni 81116	cju
			Campylobacter jejuni ICDCCJ07001	cjn
			Campylobacter jejuni subsp. doylei 269.97	cjd
			Campylobacter fetus	cff
			Campylobacter curvus	ccv
			Campylobacter hominis ATCC BAA-381	cha
			Campylobacter concisus 13826	cco
			Campylobacter lari	cla
	Arcobacter		Arcobacter butzleri	abu
	Arcobacter		Arcobacter nitrofigilis	ant
	Sulfurospirillum		Sulfurospirillum deleyianum	sdl
	Nitratiruptor		Nitratiruptor sp. SB155-2	nis
	Sulfurovum		Sulfurovum sp. NBC37-1	sun
	Nitratifractor		Nitratifractor salsuginis	nsa
	Nautilia		Nautilia profundicola	nam
Deltaproteobacteria	Geobacter		Geobacter sulfurreducens	gsu
			Geobacter metallireducens	gme
			Geobacter uraniumreducens	gur
			Geobacter lovleyi	glo
			Geobacter bemidjiensis	gbm
			Geobacter sp. FRC-32	geo
			Geobacter sp. M21	gem
			Geobacter sp. M18	geb
	Pelobacter		Pelobacter carbinolicus	pca
	Pelobacter		Pelobacter propionicus	ppd
	Desulfovibrio		Desulfovibrio vulgaris Hildenborough	dvu
			Desulfovibrio vulgaris DP4	dvl
			Desulfovibrio vulgaris Miyazaki F	dvm
			Desulfovibrio desulfuricans G20	dde
			Desulfovibrio desulfuricans ATCC 27774	dds
			Desulfovibrio magneticus	dma
			Desulfovibrio salexigens	dsa
			Desulfovibrio aespoeensis	das
			Desulfovibrio africanus	daf
	Lawsonia		Lawsonia intracellularis	lip
	Desulfomicrobium		Desulfomicrobium baculatum	dba
	Desulfohalobium		Desulfohalobium retbaense	drt
	Bdellovibrio		Bdellovibrio bacteriovorus	bba
	Bacteriovorax		Bacteriovorax marinus SJ	bmx
	Desulfotalea		Desulfotalea psychrophila	dps
	Desulfurivibrio		Desulfurivibrio alkaliphilus	dak
	Desulfobulbus		Desulfobulbus propionicus	dpr
	Desulfococcus		Candidatus Desulfococcus oleovorans	dol
	Desulfatibacillum		Desulfatibacillum alkenivorans	dal
	Desulfobacterium		Desulfobacterium autotrophicum	dat
	Anaeromyxobacter		Anaeromyxobacter dehalogenans 2CP-C	ade
			Anaeromyxobacter dehalogenans 2CP-1	acp
			Anaeromyxobacter sp. Fw109-5	afw
			Anaeromyxobacter sp. K	ank
	Myxococcus		Myxococcus xanthus	mxa
	Myxococcus		Myxococcus fulvus	mfu
	Stigmatella		Stigmatella aurantiaca	sur
	Sorangium		Sorangium cellulosum	scl
	Haliangium		Haliangium ochraceum	hoh
	Syntrophus		Syntrophus aciditrophicus	sat
	Desulfobacca		Desulfobacca acetoxidans DSM 11109	dao
	Syntrophobacter		Syntrophobacter fumaroxidans	sfu
	Desulfarculus		Desulfarculus baarsii	dbr
	Hippea		Hippea maritima	hmr
Alphaproteobacteria	Rickettsia		Rickettsia prowazekii	rpr
			Rickettsia typhi	rty
			Rickettsia canadensis	rcm
			Rickettsia conorii	rco
			Rickettsia felis	rfe
			Rickettsia akari	rak
			Rickettsia rickettsii Sheila Smith	rri
			Rickettsia rickettsii Iowa	rrj
			Rickettsia massiliae	rms
			Rickettsia peacockii	rpk
			Rickettsia africae	raf
			Rickettsia heilongjiangensis	rhe
			Rickettsia japonica	rja
			Rickettsia slovaca	rsv
			Rickettsia bellii RML369-C	rbe
			Rickettsia bellii OSU 85-389	rbo
	Orientia		Orientia tsutsugamushi Boryong	ots
	Orientia		Orientia tsutsugamushi Ikeda	ott
	Wolbachia		Wolbachia wMel	wol
			Wolbachia wBm	wbm
			Wolbachia sp. wRi	wri
			Wolbachia pipientis	wpi
	Anaplasma		Anaplasma marginale St. Maries	ama
			Anaplasma marginale Florida	amf
			Anaplasma centrale	acn
			Anaplasma phagocytophilum	aph
	Ehrlichia		Ehrlichia ruminantium Welgevonden (South Africa)	eru
			Ehrlichia ruminantium Welgevonden (France)	erw
			Ehrlichia ruminantium Gardel	erg
			Ehrlichia canis	ecn
			Ehrlichia chaffeensis	ech
	Neorickettsia		Neorickettsia sennetsu	nse
	Neorickettsia		Neorickettsia risticii	nri
	Pelagibacter		Candidatus Pelagibacter ubique	pub
	Pelagibacter		Candidatus Pelagibacter sp. IMCC9063	pel
	Midichloria		Candidatus Midichloria mitochondrii	mmn
	Mesorhizobium		Mesorhizobium loti	mlo
			Mesorhizobium ciceri	mci
			Mesorhizobium opportunistum	mop
	Chelativorans		Mesorhizobium sp. BNC1	mes
	Parvibaculum		Parvibaculum lavamentivorans	pla
	Sinorhizobium		Sinorhizobium meliloti 1021	sme
			Sinorhizobium meliloti AK83	smk
			Sinorhizobium medicae	smd
			Sinorhizobium fredii NGR234	rhi
	Agrobacterium		Agrobacterium tumefaciens C58	atu
			Agrobacterium radiobacter K84	ara
			Agrobacterium vitis S4	avi
			Agrobacterium sp. H13-3	agr
	Rhizobium		Rhizobium etli CFN 42	ret
			Rhizobium etli CIAT 652	rec
			Rhizobium leguminosarum	rle
			Rhizobium leguminosarum bv. trifolii WSM2304	rlt
			Rhizobium leguminosarum bv. trifolii WSM1325	rlg
	Liberibacter		Candidatus Liberibacter asiaticus	las
	Liberibacter		Candidatus Liberibacter solanacearum	lso
	Brucella		Brucella melitensis bv. 1 16M	bme
			Brucella melitensis ATCC 23457	bmi
			Brucella melitensis biovar Abortus	bmf
			Brucella abortus 9-941	bmb
			Brucella abortus S19	bmc
			Brucella suis 1330	bms
			Brucella suis ATCC 23445	bmt
			Brucella ovis	bov
Brucella canis			bcs
Brucella microti			bmr
Brucella pinnipedialis			bpp
Ochrobactrum		Ochrobactrum anthropi	oan
Bradyrhizobium		Bradyrhizobium japonicum	bja
		Bradyrhizobium sp. ORS 278	bra
		Bradyrhizobium sp. BTAi1	bbt
Rhodopseudomonas		Rhodopseudomonas palustris CGA009	rpa
		Rhodopseudomonas palustris HaA2	rpb
		Rhodopseudomonas palustris BisB18	rpc
		Rhodopseudomonas palustris BisB5	rpd
		Rhodopseudomonas palustris BisA53	rpe
		Rhodopseudomonas palustris TIE-1	rpt
		Rhodopseudomonas palustris DX-1	rpx
Nitrobacter		Nitrobacter winogradskyi	nwi
Nitrobacter		Nitrobacter hamburgensis	nha
Oligotropha		Oligotropha carboxidovorans OM5 (Mississippi)	oca
Oligotropha		Oligotropha carboxidovorans OM5 (Goettingen)	ocg
Bartonella		Bartonella henselae	bhe
		Bartonella quintana	bqu
		Bartonella bacilliformis	bbk
		Bartonella tribocorum	btr
		Bartonella grahamii	bgr
		Bartonella clarridgeiae	bcd
Xanthobacter		Xanthobacter autotrophicus	xau
Azorhizobium		Azorhizobium caulinodans	azc
Starkeya		Starkeya novella	sno
Methylobacterium		Methylobacterium extorquens	mex
		Methylobacterium extorquens AM1	mea
		Methylobacterium extorquens DM4	mdi
		Methylobacterium radiotolerans	mrd
		Methylobacterium sp. 4-46	met
		Methylobacterium populi	mpo
		Methylobacterium chloromethanicum	mch
		Methylobacterium nodulans	mno
Beijerinckia		Beijerinckia indica	bid
Methylocella		Methylocella silvestris	msl
Hyphomicrobium		Hyphomicrobium denitrificans	hdn
Hyphomicrobium		Hyphomicrobium sp. MC1	hmc
Rhodomicrobium		Rhodomicrobium vannielii	rva
Pelagibacterium		Pelagibacterium halotolerans	phl
Hodgkinia		Candidatus Hodgkinia cicadicola	hci
Caulobacter		Caulobacter crescentus CB15	ccr
		Caulobacter crescentus NA1000	ccs
		Caulobacter sp. K31	cak
		Caulobacter segnis	cse
Phenylobacterium		Phenylobacterium zucineum	pzu
Brevundimonas		Brevundimonas subvibrioides	bsb
Asticcacaulis		Asticcacaulis excentricus	aex
Ruegeria		Silicibacter pomeroyi	sil
Ruegeria		Ruegeria sp. TM1040	sit
Rhodobacter		Rhodobacter sphaeroides 2.4.1	rsp
		Rhodobacter sphaeroides ATCC 17029	rsh
		Rhodobacter sphaeroides ATCC 17025	rsq
		Rhodobacter sphaeroides KD131	rsk
		Rhodobacter capsulatus	rcp
Jannaschia		Jannaschia sp. CCS1	jan
Roseobacter		Roseobacter denitrificans	rde
Roseobacter		Roseobacter litoralis Och 149	rli
Paracoccus		Paracoccus denitrificans	pde
Dinoroseobacter		Dinoroseobacter shibae	dsh
Ketogulonicigenium		Ketogulonicigenium vulgare	kvu
Pseudovibrio		Pseudovibrio sp. FO-BEG1	psf
Maricaulis		Maricaulis maris	mmr
Hyphomonas		Hyphomonas neptunium	hne
Hirschia		Hirschia baltica	hba
Zymomonas		Zymomonas mobilis	zmo
		Zymomonas mobilis subsp. mobilis NCIMB 11163	zmn
		Zymomonas mobilis subsp. pomaceae ATCC 29192	zmp
Novosphingobium		Novosphingobium aromaticivorans	nar
Novosphingobium		Novosphingobium sp. PP1Y	npp
Sphingopyxis		Sphingopyxis alaskensis	sal
Sphingomonas		Sphingomonas wittichii	swi
Sphingobium		Sphingobium japonicum	sjp
		Sphingobium chlorophenolicum	sch
		Sphingobium sp. SYK-6	ssy
Erythrobacter		Erythrobacter litoralis	eli
Gluconobacter		Gluconobacter oxydans	gox
Granulobacter		Granulibacter bethesdensis	gbe
Acidiphilium		Acidiphilium cryptum JF-5	acr
Acidiphilium		Acidiphilium multivorum	amv
Gluconacetobacter		Gluconacetobacter diazotrophicus PAl 5 (Brazil)	gdi
		Gluconacetobacter diazotrophicus PAl 5 (JGI)	gdj
		Gluconacetobacter xylinus	gxy
Acetobacter		Acetobacter pasteurianus	apt
Rhodospirillum		Rhodospirillum rubrum	rru
Rhodospirillum		Rhodospirillum centenum	rce
Magnetospirillum		Magnetospirillum magneticum	mag
Azospirillum		Azospirillum sp. B510	azl
Azospirillum		Azospirillum lipoferum 4B	ali
Parvularcula		Parvularcula bermudensis	pbr
Puniceispirillum		Candidatus Puniceispirillum marinum	apb
Unclassified Alphaproteobacteria		Polymorphum gilvum	pgv
Unclassified Alphaproteobacteria		Micavibrio aeruginosavorus	mai
Other proteobacteria	Magnetococcus		Magnetococcus sp. MC-1	mgm
Chrysiogenetes	Desulfurispirillum		Desulfurispirillum indicum	din
Firmicutes	Bacillus		Bacillus subtilis	bsu
			Bacillus subtilis subsp. spizizenii W23	bss
			Bacillus subtilis subsp. spizizenii TU-B-10	bst
			Bacillus subtilis BSn5	bsn
			Bacillus halodurans	bha
			Bacillus anthracis Ames	ban
			Bacillus anthracis Ames 0581	bar
			Bacillus anthracis Sterne	bat
			Bacillus anthracis CDC 684	bah
			Bacillus anthracis A0248	bai
			Bacillus cereus biovar anthracis CI	bal
			Bacillus cereus ATCC 14579	bce
			Bacillus cereus ATCC 10987	bca
			Bacillus cereus ZK	bcz
			Bacillus cereus AH187	bcr
			Bacillus cereus B4264	bcb
			Bacillus cereus AH820	bcu
			Bacillus cereus G9842	bcg
			Bacillus cereus Q1	bcq
			Bacillus cereus 03BB102	bcx
			Bacillus cytotoxicus NVH 391-98	bcy
			Bacillus thuringiensis 97-27	btk
			Bacillus thuringiensis Al Hakam	btl
			Bacillus thuringiensis BMB171	btb
			Bacillus weihenstephanensis	bwe
			Bacillus licheniformis ATCC 14580	bli
			Bacillus licheniformis DSM13	bld
			Bacillus amyloliquefaciens FZB42	bay
			Bacillus amyloliquefaciens DSM 7	bao
			Bacillus atrophaeus	bae
			Bacillus clausii	bcl
			Bacillus pumilus	bpu
			Bacillus pseudofirmus	bpf
			Bacillus megaterium QM B1551	bmq
			Bacillus megaterium DSM 319	bmd
			Bacillus selenitireducens	bse
			Bacillus cellulosilyticus	bco
			Bacillus coagulans	bck
			Bacillus coagulans 36D1	bag
	Oceanobacillus		Oceanobacillus iheyensis	oih
	Geobacillus		Geobacillus kaustophilus	gka
			Geobacillus thermodenitrificans	gtn
			Geobacillus thermoglucosidasius	gth
			Geobacillus sp. WCH70	gwc
			Geobacillus sp. Y412MC61	gyc
			Geobacillus sp. Y412MC52	gya
			Geobacillus sp. C56-T3	gct
			Geobacillus sp. Y4.1MC1	gmc
	Anoxybacillus		Anoxybacillus flavithermus	afl
	Staphylococcus		Staphylococcus aureus N315 (MRSA/VSSA)	sau
			Staphylococcus aureus Mu50 (MRSA/VISA)	sav
			Staphylococcus aureus Mu3 (MRSA/hetero-VISA)	saw
			Staphylococcus aureus JH1 (MRSA/VSSA)	sah
			Staphylococcus aureus JH9 (MRSA/VRSA)	saj
			Staphylococcus aureus MW2 (CA-MRSA)	sam
			Staphylococcus aureus MSSA476 (MSSA)	sas
			Staphylococcus aureus MRSA252 (MRSA)	sar
			Staphylococcus aureus COL (MRSA)	sac
			Staphylococcus aureus USA300_TCH1516 (CA-MSSA)	sax
			Staphylococcus aureus USA300_FPR3757 (CA-MRSA)	saa
			Staphylococcus aureus NCTC8325	sao
			Staphylococcus aureus Newman	sae
			Staphylococcus aureus ED98	sad
			Staphylococcus aureus RF122	sab
Staphylococcus epidermidis ATCC 12228			sep
Staphylococcus epidermidis RP62A			ser
Staphylococcus haemolyticus			sha
Staphylococcus saprophyticus			ssp
Staphylococcus carnosus			sca
Staphylococcus lugdunensis			slg
Staphylococcus pseudintermedius			ssd
Listeria		Listeria monocytogenes EGD-e	lmo
		Listeria monocytogenes F2365	lmf
		Listeria monocytogenes HCC23	lmh
		Listeria monocytogenes Clip81459	lmc
		Listeria monocytogenes 08-5578	lmn
		Listeria monocytogenes 08-5923	lmy
		Listeria innocua	lin
		Listeria welshimeri SLCC5334	lwe
		Listeria seeligeri	lsg
		Listeria ivanovii	liv
Lysinibacillus		Lysinibacillus sphaericus	lsp
Exiguobacterium		Exiguobacterium sibiricum	esi
Exiguobacterium		Exiguobacterium sp. AT1b	eat
Macrococcus		Macrococcus caseolyticus	mcl
Brevibacillus		Brevibacillus brevis	bbe
Paenibacillus		Paenibacillus sp. JDR-2	pjd
		Geobacillus sp. Y412MC10	gym
		Paenibacillus polymyxa E681	ppy
		Paenibacillus polymyxa SC2	ppm
		Paenibacillus mucilaginosus	pms
		Paenibacillus terrae	pta
Alicyclobacillus		Alicyclobacillus acidocaldarius	aac
Kyrpidia		Kyrpidia tusciae	bts
Lactococcus		Lactococcus lactis subsp. lactis IL1403	lla
		Lactococcus lactis subsp. lactis KF147	llk
		Lactococcus lactis subsp. cremoris SK11	llc
		Lactococcus lactis subsp. cremoris MG1363	llm
		Lactococcus garvieae	lgr
Streptococcus		Streptococcus pyogenes SF370 (serotype M1)	spy
		Streptococcus pyogenes MGAS5005 (serotype M1)	spz
		Streptococcus pyogenes MGAS8232 (serotype M18)	spm
		Streptococcus pyogenes MGAS315 (serotype M3)	spg
		Streptococcus pyogenes SSI-1 (serotype M3)	sps
		Streptococcus pyogenes MGAS10270 (serotype M2)	sph
		Streptococcus pyogenes MGAS10750 (serotype M4)	spi
		Streptococcus pyogenes MGAS2096 (serotype M12)	spj
		Streptococcus pyogenes MGAS9429 (serotype M12)	spk
		Streptococcus pyogenes Manfredo (serotype M5)	spf
		Streptococcus pyogenes MGAS10394 (serotype M6)	spa
		Streptococcus pyogenes MGAS6180 (serotype M28)	spb
		Streptococcus pyogenes NZ131 (serotype M49)	soz
		Streptococcus pneumoniae TIGR4 (virulent serotype 4)	spn
		Streptococcus pneumoniae D39 (virulent serotype 2)	spd
		Streptococcus pneumoniae R6 (avirulent)	spr
		Streptococcus pneumoniae CGSP14 (serotype 14)	spw
		Streptococcus pneumoniae G54 (serotype 19F)	spx
		Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)	sne
		Streptococcus pneumoniae Hungary19A 6	spv
		Streptococcus pneumoniae 70585	snm
		Streptococcus pneumoniae JJA	sjj
		Streptococcus pneumoniae P1031	spp
		Streptococcus pneumoniae Taiwan19F-14	snt
		Streptococcus pneumoniae TCH8431/19A	snc
		Streptococcus pneumoniae 670-6B	snb
		Streptococcus pneumoniae AP200	snp
		Streptococcus agalactiae 2603 (serotype V)	sag
		Streptococcus agalactiae NEM316 (serotype III)	san
		Streptococcus agalactiae A909 (serotype Ia)	sak
		Streptococcus mutans UA159	smu
		Streptococcus mutans NN2025	smc
		Streptococcus thermophilus CNRZ1066	stc
		Streptococcus thermophilus LMG18311	stl
		Streptococcus thermophilus LMD-9	ste
		Streptococcus sanguinis	ssa
		Streptococcus suis 05ZYH33	ssu
		Streptococcus suis 98HAH33	ssv
		Streptococcus suis BM407	ssb
		Streptococcus suis P1/7	ssi
		Streptococcus suis SC84	sss
		Streptococcus suis ST3	sst
		Streptococcus gordonii	sgo
		Streptococcus equi subsp. zooepidemicus H70	seq
		Streptococcus equi subsp. zooepidemicus MGCS10565	sez
		Streptococcus equi subsp. equi 4047	seu
		Streptococcus uberis	sub
		Streptococcus dysgalactiae	sds
		Streptococcus gallolyticus UCN34	sga
		Streptococcus gallolyticus subsp. gallolyticus	sgg
		Streptococcus mitis B6	smb
		Streptococcus oralis	sor
		Streptococcus parauberis	stk
		Streptococcus pasteurianus	stb
		Streptococcus parasanguinis	scp
		Streptococcus salivarius	ssr
		Streptococcus pseudopneumoniae	std
		Streptococcus macedonicus	smn
Lactobacillus		Lactobacillus plantarum WCFS1	lpl
		Lactobacillus plantarum JDM1	lpj
		Lactobacillus plantarum subsp. plantarum ST-III	lps
		Lactobacillus johnsonii NCC 533	ljo
		Lactobacillus johnsonii FI9785	ljf
		Lactobacillus acidophilus NCFM	lac
		Lactobacillus acidophilus 30SC	lai
		Lactobacillus sakei	lsa
		Lactobacillus salivarius	lsl
		Lactobacillus delbrueckii ATCC 11842	ldb
		Lactobacillus delbrueckii ATCC BAA-365	lbu
		Lactobacillus delbrueckii subsp. bulgaricus ND02	lde
		Lactobacillus brevis	lbr
		Lactobacillus casei ATCC 334	lca
		Lactobacillus casei BL23	lcb
		Lactobacillus casei Zhang	lcz
		Lactobacillus gasseri	lga
		Lactobacillus reuteri DSM 20016	lre
		Lactobacillus reuteri JCM 1112	lrf
		Lactobacillus reuteri SD2112	lru
		Lactobacillus helveticus	lhe
		Lactobacillus fermentum	lfe
		Lactobacillus rhamnosus GG	lrh
		Lactobacillus rhamnosus Lc 705	lrl
		Lactobacillus crispatus	lcr
		Lactobacillus amylovorus	lam
		Lactobacillus buchneri	lbh
		Lactobacillus kefiranofaciens	lke
		Lactobacillus ruminis	lrm
		Lactobacillus sanfranciscensis	lsn
Pediococcus		Pediococcus pentosaceus	ppe
Enterococcus		Enterococcus faecalis	efa
Melissococcus		Melissococcus plutonius	mps
Tetragenococcus		Tetragenococcus halophilus	thl
Oenococcus		Oenococcus oeni	ooe
Leuconostoc		Leuconostoc mesenteroides	lme
		Leuconostoc citreum	lci
		Leuconostoc kimchii	lki
		Leuconostoc gasicomitatum	lgs
		Leuconostoc sp. C2	lec
Aerococcus		Aerococcus urinae	aur
Carnobacterium		Carnobacterium sp. 17-4	crn
Weissella		Weissella koreensis	wko
Clostridium		Clostridium acetobutylicum ATCC 824	cac
		Clostridium acetobutylicum DSM 1731	cae
		Clostridium perfringens 13	cpe
		Clostridium perfringens ATCC 13124	cpf
		Clostridium perfringens SM101	cpr
		Clostridium tetani E88	ctc
		Clostridium novyi	cno
		Clostridium thermocellum	cth
		Clostridium difficile 630	cdf
		Clostridium difficile CD196	cdc
		Clostridium difficile R20291	cdl
		Clostridium botulinum A ATCC 3502	cbo
		Clostridium botulinum A ATCC 19397	cba
		Clostridium botulinum A Hall	cbh
		Clostridium botulinum A2	cby
		Clostridium botulinum A3 Loch Maree	cbl
		Clostridium botulinum B Eklund 17B	cbk
		Clostridium botulinum B1 Okra	cbb
		Clostridium botulinum Ba4	cbi
		Clostridium botulinum BKT015925	cbn
		Clostridium botulinum E3	cbt
		Clostridium botulinum F Langeland	cbf
		Clostridium beijerinckii	cbe
		Clostridium kluyveri DSM 555	ckl
		Clostridium kluyveri NBRC 12016	ckr
		Clostridium phytofermentans	cpy
		Clostridium cellulolyticum	cce
		Clostridium ljungdahlii	clj
		Clostridium saccharolyticum	csh
		Clostridium cellulovorans	ccb
		Clostridium sticklandii	cst
		Clostridium sp. SY8519	cls
		Clostridium clariflavum DSM 19732	ccl
Alkaliphilus		Alkaliphilus metalliredigens	amt
Alkaliphilus		Alkaliphilus oremlandii	aoe
Arthromitus		Candidatus Arthromitus sp. SFB-mouse-Japan	asf
Arthromitus		Candidatus Arthromitus sp. SFB-rat-Yit	asb
Symbiobacterium		Symbiobacterium thermophilum	sth
Syntrophomonas		Syntrophomonas wolfei	swo
Syntrophothermus		Syntrophothermus lipocalidus	slp
Desulfitobacterium		Desulfitobacterium hafniense Y51	dsy
Desulfitobacterium		Desulfitobacterium hafniense DCB-2	dhd
Desulfotomaculum		Desulfotomaculum reducens	drm
		Desulfotomaculum acetoxidans	dae
		Desulfotomaculum carboxydivorans	dca
		Desulfotomaculum kuznetsovii	dku
		Desulfotomaculum ruminis	dru
Pelotomaculum		Pelotomaculum thermopropionicum	pth
Desulforudis		Candidatus Desulforudis audaxviator	dau
Thermincola		Thermincola potens JR	tjr
Syntrophobotulus		Syntrophobotulus glycolicus	sgy
Heliobacterium		Heliobacterium modesticaldum	hmo
Finegoldia		Finegoldia magna	fma
Anaerococcus		Anaerococcus prevotii	apr
Eubacterium		Eubacterium eligens	eel
		Eubacterium rectale	ere
		Eubacterium limosum	elm
Butyrivibrio		Butyrivibrio proteoclasticus	bpb
Cellulosilyticum		Clostridium lentocellum	cle
Roseburia		Roseburia hominis	rho
Ethanoligenens		Ethanoligenens harbinense	eha
Ruminococcus		Ruminococcus albus	ral
Oscillibacter		Oscillibacter valericigenes	ova
Thermaerobacter		Thermaerobacter marianensis	tmr
Sulfobacillus		Sulfobacillus acidophilus	say
Filifactor		Filifactor alocis	faa
Unclassified Clostridiales		Clostridiales genomosp. BVAB3	clo
Thermoanaerobacter		Thermoanaerobacter tengcongensis	tte
		Thermoanaerobacter sp. X514	tex
		Thermoanaerobacter sp. X513	thx
		Thermoanaerobacter pseudethanolicus	tpd
		Thermoanaerobacter italicus	tit
		Thermoanaerobacter mathranii	tmt
		Thermoanaerobacter brockii	tbo
		Thermoanaerobacter wiegelii	twi
Carboxydothermus		Carboxydothermus hydrogenoformans	chy
Tepidanaerobacter		Tepidanaerobacter sp. Re1	tep
Moorella		Moorella thermoacetica	mta
Ammonifex		Ammonifex degensii	adg
Caldicellulosiruptor		Caldicellulosiruptor saccharolyticus	csc
		Caldicellulosiruptor bescii	ate
		Caldicellulosiruptor obsidiansis	cob
		Caldicellulosiruptor hydrothermalis	chd
		Caldicellulosiruptor owensensis	cow
		Caldicellulosiruptor kristjanssonii	cki
		Caldicellulosiruptor kronotskyensis	ckn
		Caldicellulosiruptor lactoaceticus	clc
Thermosediminibacter		Thermosediminibacter oceani	toc
Thermoanaerobacterium		Thermoanaerobacterium thermosaccharolyticum	ttm
Thermoanaerobacterium		Thermoanaerobacterium xylanolyticum	txy
Coprothermobacter		Coprothermobacter proteolyticus	cpo
Thermodesulfobium		Thermodesulfobium narugense	tnr
Mahella		Mahella australiensis	mas
Natranaerobius		Natranaerobius thermophilus	nth
Halothermothrix		Halothermothrix orenii	hor
Halanaerobium		Halanaerobium hydrogeniformans	has
Acetohalobium		Acetohalobium arabaticum	aar
Veillonella		Veillonella parvula	vpr
Selenomonas		Selenomonas sputigena	ssg
Megasphaera		Megasphaera elsdenii	med
Acidaminococcus		Acidaminococcus fermentans	afn
Acidaminococcus		Acidaminococcus intestini	ain
Erysipelothrix		Erysipelothrix rhusiopathiae	erh
Tenericutes	Mycoplasma		Mycoplasma genitalium	mge
			Mycoplasma pneumoniae	mpn
			Mycoplasma pulmonis	mpu
			Mycoplasma penetrans	mpe
			Mycoplasma gallisepticum	mga
			Mycoplasma mycoides subsp. mycoides SC PG1	mmy
			Mycoplasma mycoides subsp. capri LC 95010	mml
			Mycoplasma mobile	mmo
			Mycoplasma hyopneumoniae 232	mhy
			Mycoplasma hyopneumoniae J	mhj
			Mycoplasma hyopneumoniae 7448	mhp
			Mycoplasma synoviae	msy
			Mycoplasma capricolum	mcp
			Mycoplasma agalactiae PG2	maa
			Mycoplasma agalactiae 5632	mal
			Mycoplasma arthritidis	mat
			Mycoplasma conjunctivae	mco
			Mycoplasma hominis	mho
			Mycoplasma crocodyli	mcd
			Mycoplasma hyorhinis	mhr
			Mycoplasma fermentans JER	mfr
			Mycoplasma fermentans M64	mfm
			Mycoplasma bovis PG45	mbv
			Mycoplasma bovis Hubei-1	mbh
			Mycoplasma leachii	mlc
			Mycoplasma haemofelis	mha
			Mycoplasma suis Illinois	mss
			Mycoplasma suis KI3806	msk
			Mycoplasma putrefaciens	mpf
			Mycoplasma haemocanis	mhe
	Ureaplasma		Ureaplasma parvum serovar 3 ATCC 700970	uur
			Ureaplasma parvum serovar 3 ATCC 27815	upa
			Ureaplasma urealyticum serovar 10 ATCC 33699	uue
	Phytoplasma		Phytoplasma OY	poy
			Phytoplasma AYWB	ayw
			Candidatus Phytoplasma mali	pml
			Candidatus Phytoplasma australiense	pal
	Acholeplasma		Acholeplasma laidlawii	acl
	Mesoplasma		Mesoplasma florum	mfl
Actinobacteria	Mycobacterium		Mycobacterium tuberculosis H37Rv	mtu
			Mycobacterium tuberculosis CDC1551	mtc
			Mycobacterium tuberculosis H37Ra	mra
			Mycobacterium tuberculosis F11	mtf
			Mycobacterium tuberculosis KZN 1435	mtb
			Mycobacterium bovis AF2122/97	mbo
			Mycobacterium bovis BCG Pasteur 1173P2	mbb
			Mycobacterium bovis BCG Tokyo 172	mbt
			Mycobacterium africanum	maf
			Mycobacterium canettii	mce
			Mycobacterium leprae TN	mle
			Mycobacterium leprae Br4923	mlb
			Mycobacterium avium paratuberculosis	mpa
			Mycobacterium avium 104	mav
			Mycobacterium smegmatis	msm
			Mycobacterium ulcerans	mul
			Mycobacterium vanbaalenii	mva
			Mycobacterium gilvum	mgi
			Mycobacterium abscessus ATCC 19977	mab
			Mycobacterium sp. MCS	mmc
			Mycobacterium sp. KMS	mkm
			Mycobacterium sp. JLS	mjl
			Mycobacterium sp. Spyr1	msp
			Mycobacterium sp. JDM601	mjd
			Mycobacterium marinum M	mmi
	Amycolicicoccus		Amycolicicoccus subflavus	asd
	Corynebacterium		Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)	cgl
			Corynebacterium glutamicum ATCC 13032 (Bielefeld)	cgb
			Corynebacterium glutamicum R	cgt
			Corynebacterium efficiens	cef
			Corynebacterium diphtheriae	cdi
			Corynebacterium jeikeium	cjk
			Corynebacterium urealyticum	cur
			Corynebacterium aurimucosum	car
			Corynebacterium kroppenstedtii	ckp
			Corynebacterium pseudotuberculosis	cpu
			Corynebacterium resistens	crd
			Corynebacterium ulcerans	cul
			Corynebacterium variabile	cva
	Nocardia		Nocardia farcinica	nfa
	Rhodococcus		Rhodococcus sp. RHA1	rha
			Rhodococcus erythropolis	rer
			Rhodococcus opacus	rop
			Rhodococcus equi	req
	Gordonia		Gordonia bronchialis	gbr
	Tsukamurella		Tsukamurella paurometabola	tpr
	Segniliparus		Segniliparus rotundus	srt
	Streptomyces		Streptomyces coelicolor	sco
			Streptomyces avermitilis	sma
			Streptomyces griseus	sgr
			Streptomyces scabiei	scb
			Streptomyces sp. SirexAA-E	ssx
			Streptomyces violaceusniger	svl
			Streptomyces cattleya	sct
			Streptomyces flavogriseus	sfa
	Kitasatospora		Kitasatospora setae	ksk
	Tropheryma		Tropheryma whipplei Twist	twh
	Tropheryma		Tropheryma whipplei TW08/27	tws
	Leifsonia		Leifsonia xyli xyli CTCB07	lxx
	Clavibacter		Clavibacter michiganensis subsp. michiganensis	cmi
	Clavibacter		Clavibacter michiganensis subsp. sepedonicus	cms
	Microbacterium		Microbacterium testaceum	mts
	Arthrobacter		Arthrobacter sp. FB24	art
			Arthrobacter aurescens	aau
Arthrobacter chlorophenolicus			ach
Arthrobacter arilaitensis			aai
Arthrobacter phenanthrenivorans			apn
Renibacterium		Renibacterium salmoninarum	rsa
Kocuria		Kocuria rhizophila	krh
Micrococcus		Micrococcus luteus	mlu
Rothia		Rothia mucilaginosa	rmu
Rothia		Rothia dentocariosa	rdn
Beutenbergia		Beutenbergia cavernae	bcv
Brachybacterium		Brachybacterium faecium	bfa
Jonesia		Jonesia denitrificans	jde
Kytococcus		Kytococcus sedentarius	kse
Xylanimonas		Xylanimonas cellulosilytica	xce
Isoptericola		Isoptericola variabilis	iva
Sanguibacter		Sanguibacter keddieii	ske
Cellulomonas		Cellulomonas flavigena	cfl
Cellulomonas		Cellulomonas fimi	cfi
Intrasporangium		Intrasporangium calvum	ica
Propionibacterium		Propionibacterium acnes KPA171202	pac
		Propionibacterium acnes SK137	pak
		Propionibacterium acnes TypeIA2 P.acn17	pav
		Propionibacterium acnes TypeIA2 P.acn31	pax
		Propionibacterium acnes TypeIA2 P.acn33	paz
		Propionibacterium freudenreichii	pfr
Microlunatus		Microlunatus phosphovorus	mph
Nocardioides		Nocardioides sp. JS614	nca
Kribbella		Kribbella flavida	kfl
Thermobifida		Thermobifida fusca	tfu
Nocardiopsis		Nocardiopsis dassonvillei	nda
Thermomonospora		Thermomonospora curvata	tcu
Streptosporangium		Streptosporangium roseum	sro
Frankia		Frankia sp. CcI3	fra
		Frankia sp. EAN1pec	fre
		Frankia sp. EuI1c	fri
		Frankia alni	fal
		Frankia symbiont	fsy
Acidothermus		Acidothermus cellulolyticus	ace
Nakamurella		Nakamurella multipartita	nml
Geodermatophilus		Geodermatophilus obscurus	gob
Kineococcus		Kineococcus radiotolerans	kra
Saccharopolyspora		Saccharopolyspora erythraea	sen
Saccharomonospora		Saccharomonospora viridis	svi
Thermobispora		Thermobispora bispora	tbi
Amycolatopsis		Amycolatopsis mediterranei	amd
Pseudonocardia		Pseudonocardia dioxanivorans	pdx
Actinosynnema		Actinosynnema mirum	ami
Salinispora		Salinispora tropica	stp
Salinispora		Salinispora arenicola	saq
Micromonospora		Micromonospora aurantiaca	mau
Micromonospora		Micromonospora sp. L5	mil
Verrucosispora		Verrucosispora maris	vma
Catenulispora		Catenulispora acidiphila	cai
Stackebrandtia		Stackebrandtia nassauensis	sna
Arcanobacterium		Arcanobacterium haemolyticum	ahe
Mobiluncus		Mobiluncus curtisii	mcu
Bifidobacterium		Bifidobacterium longum NCC2705	blo
		Bifidobacterium longum DJO10A	blj
		Bifidobacterium longum subsp. infantis ATCC 15697	bln
		Bifidobacterium longum subsp. infantis 157F	blf
		Bifidobacterium longum subsp. longum JDM301	bll
		Bifidobacterium longum subsp. longum BBMN68	blb
		Bifidobacterium longum subsp. longum JCM 1217	blm
		Bifidobacterium adolescentis	bad
		Bifidobacterium animalis subsp. lactis AD011	bla
		Bifidobacterium animalis subsp. lactis Bl-04	blc
		Bifidobacterium animalis subsp. lactis DSM 10140	blt
		Bifidobacterium dentium	bde
		Bifidobacterium bifidum S17	bbi
		Bifidobacterium bifidum PRL2010	bbp
Gardnerella		Gardnerella vaginalis	gva
Gardnerella		Gardnerella vaginalis ATCC 14019	gvg
Rubrobacter		Rubrobacter xylanophilus	rxy
Conexibacter		Conexibacter woesei	cwo
Acidimicrobium		Acidimicrobium ferrooxidans DSM 10331	afo
Cryptobacterium		Cryptobacterium curtum	ccu
Slackia		Slackia heliotrinireducens	shi
Atopobium		Atopobium parvulum	apv
Eggerthella		Eggerthella lenta	ele
Eggerthella		Eggerthella sp. YY7918	eyy
Olsenella		Olsenella uli	ols
Coriobacterium		Coriobacterium glomerans	cgo
Chlamydiae	Chlamydia		Chlamydia trachomatis D/UW-3/CX	ctr
			Chlamydia trachomatis A/HAR-13	cta
			Chlamydia trachomatis L2/434/Bu	ctb
			Chlamydia trachomatis L2b/UCH-1/proctitis	ctl
			Chlamydia trachomatis L2c	cto
			Chlamydia trachomatis B/Jali20/OT	ctj
			Chlamydia trachomatis B/TZ1A828/OT	ctz
			Chlamydia muridarum	cmu
	Chlamydophila		Chlamydophila pneumoniae CWL029	cpn
			Chlamydophila pneumoniae AR39	cpa
			Chlamydophila pneumoniae J138	cpj
			Chlamydophila pneumoniae TW183	cpt
			Chlamydophila caviae	cca
			Chlamydophila abortus	cab
			Chlamydophila felis	cfe
			Chlamydophila pecorum	cpm
			Chlamydophila psittaci	chp
	Protochlamydia		Candidatus Protochlamydia amoebophila	pcu
	Parachlamydia		Parachlamydia acanthamoebae	puv
	Waddlia		Waddlia chondrophila	wch
	Simkania		Simkania negevensis	sng
Spirochaetes	Borrelia		Borrelia burgdorferi B31	bbu
			Borrelia burgdorferi ZS7	bbz
			Borrelia garinii	bga
			Borrelia afzelii	baf
			Borrelia bissettii	bbs
			Borrelia turicatae	btu
			Borrelia hermsii	bhr
			Borrelia duttonii	bdu
			Borrelia recurrentis	bre
	Treponema		Treponema pallidum subsp. pallidum Nichols	tpa
			Treponema pallidum subsp. pallidum SS14	tpp
			Treponema denticola	tde
			Treponema succinifaciens	tsu
			Treponema brennaborense	tbe
			Treponema azotonutricium	taz
			Treponema primitia	tpi
			Treponema paraluiscuniculi	tpl
	Spirochaeta		Spirochaeta smaragdinae	ssm
			Spirochaeta thermophila	sta
			Spirochaeta coccoides	scc
			Spirochaeta caldaria DSM 7334	scd
	Leptospira		Leptospira interrogans serovar lai	lil
			Leptospira interrogans serovar Copenhageni	lic
			Leptospira borgpetersenii JB197	lbj
			Leptospira borgpetersenii L550	lbl
			Leptospira biflexa serovar Patoc Patoc 1 (Paris)	lbi
			Leptospira biflexa serovar Patoc Patoc 1 (Ames)	lbf
	Brachyspira		Brachyspira hyodysenteriae	bhy
			Brachyspira murdochii	brm
			Brachyspira pilosicoli	bpo
	Sphaerochaeta		Spirochaeta sp. Buddy	sbu
	Sphaerochaeta		Sphaerochaeta pleomorpha Grapes	sgp
Acidobacteria	Koribacter		Candidatus Koribacter versatilis	aba
	Acidobacterium		Acidobacterium capsulatum	aca
	Granulicella		Granulicella tundricola	acm
	Granulicella		Granulicella mallensis	gma
	Terriglobus		Terriglobus saanensis	tsa
	Solibacter		Candidatus Solibacter usitatus	sus
	Chloracidobacterium		Candidatus Chloracidobacterium thermophilum B	ctm
Bacteroidetes	Bacteroides		Bacteroides thetaiotaomicron	bth
			Bacteroides fragilis YCH46	bfr
			Bacteroides fragilis NCTC9343	bfs
			Bacteroides vulgatus	bvu
			Bacteroides helcogenes	bhl
			Bacteroides salanitronis	bsa
	Porphyromonas		Porphyromonas gingivalis W83	pgi
			Porphyromonas gingivalis ATCC 33277	pgn
			Porphyromonas gingivalis TDC60	pgt
			Porphyromonas asaccharolytica	pah
	Parabacteroides		Parabacteroides distasonis	pdi
	Paludibacter		Paludibacter propionicigenes	ppn
	Odoribacter		Odoribacter splanchnicus	osp
	Azobacteroides		Candidatus Azobacteroides pseudotrichonymphae	aps
	Prevotella		Prevotella ruminicola	pru
			Prevotella melaninogenica	pmz
			Prevotella denticola	pdn
	Salinibacter		Salinibacter ruber	sru
	Salinibacter		Salinibacter ruber	srm
	Rhodothermus		Rhodothermus marinus DSM 4252	rmr
	Rhodothermus		Rhodothermus marinus SG0.5JP17-172	rmg
	Chitinophaga		Chitinophaga pinensis	cpi
	Pedobacter		Pedobacter heparinus	phe
	Pedobacter		Pedobacter saltans	psn
	Sphingobacterium		Sphingobacterium sp. 21	shg
	Haliscomenobacter		Haliscomenobacter hydrossis	hhy
	Cyclobacterium		Cyclobacterium marinum	cmr
	Cytophaga		Cytophaga hutchinsonii	chu
	Dyadobacter		Dyadobacter fermentans	dfe
	Spirosoma		Spirosoma linguale	sli
	Leadbetterella		Leadbetterella byssophila	lby
	Runella		Runella slithyformis	rsi
	Marivirga		Marivirga tractuosa	mtt
	Gramella		Gramella forsetii	gfo
	Flavobacterium		Flavobacterium johnsoniae	fjo
			Flavobacterium psychrophilum	fps
			Flavobacterium branchiophilum	fbr
			Flavobacterium columnare	fco
	Capnocytophaga		Capnocytophaga ochracea	coc
	Capnocytophaga		Capnocytophaga canimorsus	ccm
	Robiginitalea		Robiginitalea biformata	rbi
	Zunongwangia		Zunongwangia profunda	zpr
	Croceibacter		Croceibacter atlanticus	cat
	Riemerella		Riemerella anatipestifer	ran
	Maribacter		Maribacter sp. HTCC2170	fbc
	Cellulophaga		Cellulophaga algicola	cao
	Cellulophaga		Cellulophaga lytica	cly
	Weeksella		Weeksella virosa	wvi
	Krokinobacter		Krokinobacter sp. 4H-3-7-5	kdi
	Lacinutrix		Lacinutrix sp. 5H-3-7-4	lan
	Zobellia		Zobellia galactanivorans	zga
	Muricauda		Muricauda ruestringensis	mrs
	Unclassified Flavobacteriaceae		Flavobacteriaceae bacterium	fba
	Sulcia		Candidatus Sulcia muelleri GWSS	smg
			Candidatus Sulcia muelleri SMDSEM	sms
			Candidatus Sulcia muelleri DMIN	smh
			Candidatus Sulcia muelleri CARI	sum
	Blattabacterium		Blattabacterium sp. (Blattella germanica)	bbl
			Blattabacterium sp. (Periplaneta americana)	bpi
			Blattabacterium sp. (Mastotermes darwiniensis)	bmm
			Blattabacterium sp. (Cryptocercus punctulatus)	bcp
	Fluviicola		Fluviicola taffensis	fte
	Amoebophilus		Candidatus Amoebophilus asiaticus	aas
Fibrobacteres	Fibrobacter		Fibrobacter succinogenes	fsu
Fusobacteria	Fusobacterium		Fusobacterium nucleatum	fnu
	Leptotrichia		Leptotrichia buccalis	lba
	Sebaldella		Sebaldella termitidis	str
	Streptobacillus		Streptobacillus moniliformis	smf
	Ilyobacter		Ilyobacter polytropus	ipo
Verrucomicrobia	Opitutus		Opitutus terrae	ote
	Coraliomargarita		Coraliomargarita akajimensis	caa
	Methylacidiphilum		Methylacidiphilum infernorum	min
	Akkermansia		Akkermansia muciniphila	amu
Gemmatimonadetes	Gemmatimonas		Gemmatimonas aurantiaca	gau
Planctomycetes	Rhodopirellula		Rhodopirellula baltica	rba
	Pirellula		Pirellula staleyi	psl
	Planctomyces		Planctomyces limnophilus	plm
	Planctomyces		Planctomyces brasiliensis	pbs
	Isosphaera		Isosphaera pallida	ipa
Elusimicrobia	Elusimicrobium		Elusimicrobium minutum	emi
Elusimicrobia	Termite group 1		Uncultured Termite group 1 bacterium phylotype Rs-D17	rsd
Synergistetes	Thermanaerovibrio		Thermanaerovibrio acidaminovorans	tai
	Aminobacterium		Aminobacterium colombiense	aco
	Thermovirga		Thermovirga lienii	tli
Cyanobacteria	Synechocystis		Synechocystis sp. PCC6803	syn
	Synechococcus		Synechococcus sp. WH8102	syw
			Synechococcus elongatus PCC6301	syc
			Synechococcus elongatus PCC7942	syf
			Synechococcus sp. CC9605	syd
			Synechococcus sp. CC9902	sye
			Synechococcus sp. CC9311	syg
			Synechococcus sp. RCC307	syr
			Synechococcus sp. WH7803	syx
			Synechococcus sp. PCC7002	syp
			Synechococcus sp. JA-3-3Ab	cya
			Synechococcus sp. JA-2-3B'a(2-13)	cyb
	Thermosynechococcus		Thermosynechococcus elongatus	tel
	Microcystis		Microcystis aeruginosa	mar
	Cyanothece		Cyanothece sp. ATCC 51142	cyt
			Cyanothece sp. PCC 8801	cyp
			Cyanothece sp. PCC 7424	cyc
			Cyanothece sp. PCC 7425	cyn
			Cyanothece sp. PCC 8802	cyh
			Cyanothece sp. PCC 7822	cyj
	Unclassified Chroococcales		Cyanobacterium UCYN-A	cyu
	Gloeobacter		Gloeobacter violaceus	gvi
	Nostoc		Anabaena sp. PCC7120	ana
			Nostoc punctiforme	npu
			Anabaena variabilis	ava
	Trichormus		Anabaena azollae 0708	naz
	Prochlorococcus		Prochlorococcus marinus SS120	pma
			Prochlorococcus marinus MED4	pmm
			Prochlorococcus marinus MIT 9313	pmt
			Prochlorococcus marinus NATL2A	pmn
			Prochlorococcus marinus MIT9312	pmi
			Prochlorococcus marinus AS9601	pmb
			Prochlorococcus marinus MIT 9515	pmc
			Prochlorococcus marinus MIT 9303	pmf
			Prochlorococcus marinus MIT 9301	pmg
			Prochlorococcus marinus MIT 9215	pmh
			Prochlorococcus marinus MIT 9211	pmj
			Prochlorococcus marinus NATL1A	pme
	Trichodesmium		Trichodesmium erythraeum	ter
	Acaryochloris		Acaryochloris marina	amr
Green sulfur bacteria	Chlorobaculum		Chlorobaculum tepidum	cte
	Chlorobaculum		Chlorobaculum parvum NCIB 8327	cpc
	Chlorobium		Chlorobium chlorochromatii	cch
			Chlorobium phaeobacteroides DSM 266	cph
			Chlorobium phaeobacteroides BS1	cpb
			Chlorobium limicola	cli
			Chlorobium phaeovibrioides	pvi
	Pelodictyon		Pelodictyon luteolum	plt
	Pelodictyon		Pelodictyon phaeoclathratiforme	pph
	Prosthecochloris		Prosthecochloris aestuarii	paa
	Chloroherpeton		Chloroherpeton thalassium	cts
Green nonsulfur bacteria	Dehalococcoides		Dehalococcoides ethenogenes	det
			Dehalococcoides sp. CBDB1	deh
			Dehalococcoides sp. BAV1	deb
			Dehalococcoides sp. VS	dev
			Dehalococcoides sp. GT	deg
	Dehalogenimonas		Dehalogenimonas lykanthroporepellens	dly
	Roseiflexus		Roseiflexus sp. RS-1	rrs
	Roseiflexus		Roseiflexus castenholzii DSM13941	rca
	Chloroflexus		Chloroflexus aurantiacus	cau
			Chloroflexus aggregans	cag
			Chloroflexus sp. Y-400-fl	chl
	Herpetosiphon		Herpetosiphon aurantiacus	hau
	Thermomicrobium		Thermomicrobium roseum	tro
	Sphaerobacterineae		Sphaerobacter thermophilus	sti
	Anaerolinea		Anaerolinea thermophila	atm
Deinococcus-Thermus	Deinococcus		Deinococcus radiodurans	dra
			Deinococcus geothermalis	dge
			Deinococcus deserti	ddr
			Deinococcus maricopensis	dmr
			Deinococcus proteolyticus	dpt
	Truepera		Truepera radiovictrix	tra
	Thermus		Thermus thermophilus HB27	tth
			Thermus thermophilus HB8	ttj
			Thermus scotoductus	tsc
	Meiothermus		Meiothermus ruber	mrb
	Meiothermus		Meiothermus silvanus	msv
	Oceanithermus		Oceanithermus profundus	opr
	Marinithermus		Marinithermus hydrothermalis	mhd
Hyperthermophilic bacteria	Aquifex		Aquifex aeolicus	aae
	Hydrogenobaculum		Hydrogenobaculum sp. Y04AAS1	hya
			Hydrogenobaculum sp. 3684	hyd
			Hydrogenobaculum sp. SHO	hys
	Hydrogenobacter		Hydrogenobacter thermophilus	hth
	Thermocrinis		Thermocrinis albus	tal
	Sulfurihydrogenibium		Sulfurihydrogenibium sp. YO3AOP1	sul
	Sulfurihydrogenibium		Sulfurihydrogenibium azorense	saf
	Persephonella		Persephonella marina	pmx
	Thermovibrio		Thermovibrio ammonificans	tam
	Desulfurobacterium		Desulfurobacterium thermolithotrophum	dte
	Thermotoga		Thermotoga maritima	tma
			Thermotoga petrophila	tpt
			Thermotoga lettingae	tle
			Thermotoga sp. RQ2	trq
			Thermotoga neapolitana	tna
			Thermotoga naphthophila	tnp
			Thermotoga thermarum	tta
	Thermosipho		Thermosipho melanesiensis	tme
	Thermosipho		Thermosipho africanus	taf
	Fervidobacterium		Fervidobacterium nodosum	fno
	Petrotoga		Petrotoga mobilis	pmo
	Kosmotoga		Kosmotoga olearia	kol
	Marinitoga		Marinitoga piezophila	mpz
	Dictyoglomus		Dictyoglomus thermophilum	dth
	Dictyoglomus		Dictyoglomus turgidum	dtu
	Thermodesulfovibrio		Thermodesulfovibrio yellowstonii	tye
	Nitrospira		Candidatus Nitrospira defluvii	nde
	Thermobaculum		Thermobaculum terrenum	ttr
	Deferribacter		Deferribacter desulfuricans SSM1	ddf
	Denitrovibrio		Denitrovibrio acetiphilus	dap
	Calditerrivibrio		Calditerrivibrio nitroreducens	cni
	Flexistipes		Flexistipes sinusarabici	fsi
	Thermodesulfatator		Thermodesulfatator indicus	tid
	Thermodesulfobacterium		Thermodesulfobacterium sp. OPB45	top
Archaea	Euryarchaeota	Methanocaldococcus		Methanocaldococcus jannaschii	mja
				Methanocaldococcus fervens	mfe
				Methanocaldococcus vulcanius	mvu
				Methanocaldococcus sp. FS406-22	mfs
				Methanocaldococcus infernus	mif
		Methanotorris		Methanotorris igneus	mig
		Methanococcus		Methanococcus maripaludis S2	mmp
				Methanococcus maripaludis C5	mmq
				Methanococcus maripaludis C6	mmx
				Methanococcus maripaludis C7	mmz
				Methanococcus maripaludis XI	mmd
				Methanococcus aeolicus	mae
				Methanococcus vannielii	mvn
				Methanococcus voltae	mvo
		Methanothermococcus		Methanothermococcus okinawensis	mok
		Methanosarcina		Methanosarcina acetivorans	mac
				Methanosarcina barkeri	mba
				Methanosarcina mazei	mma
		Methanococcoides		Methanococcoides burtonii	mbu
		Methanohalophilus		Methanohalophilus mahii	mmh
		Methanohalobium		Methanohalobium evestigatum	mev
		Methanosalsum		Methanosalsum zhilinae	mzh
		Methanosaeta		Methanosaeta thermophila	mtp
		Methanosaeta		Methanosaeta concilii	mcj
		Methanospirillum		Methanospirillum hungatei	mhu
		Methanocorpusculum		Methanocorpusculum labreanum	mla
		Methanoculleus		Methanoculleus marisnigri	mem
		Methanoplanus		Methanoplanus petrolearius	mpi
		Methanoregula		Methanoregula boonei	mbn
		Methanosphaerula		Candidatus Methanosphaerula palustris	mpl
		Methanocella		Methanocella paludicola	mpd
		Methanothermobacter		Methanothermobacter thermautotrophicus	mth
		Methanothermobacter		Methanothermobacter marburgensis	mmg
		Methanosphaera		Methanosphaera stadtmanae	mst
		Methanobrevibacter		Methanobrevibacter smithii ATCC 35061	msi
		Methanobrevibacter		Methanobrevibacter ruminantium	mru
		Methanobacterium		Methanobacterium sp. AL-21	mel
		Methanobacterium		Methanobacterium sp. SWAN-1	mew
		Methanothermus		Methanothermus fervidus	mfv
		Methanopyrus		Methanopyrus kandleri	mka
		Archaeoglobus		Archaeoglobus fulgidus	afu
				Archaeoglobus profundus	apo
				Archaeoglobus veneficus	ave
		Ferroglobus		Ferroglobus placidus	fpl
		Halobacterium		Halobacterium sp. NRC-1	hal
		Halobacterium		Halobacterium salinarum R1	hsl
		Haloarcula		Haloarcula marismortui	hma
		Haloarcula		Haloarcula hispanica	hhi
		Haloquadratum		Haloquadratum walsbyi	hwa
		Natronomonas		Natronomonas pharaonis	nph
		Halorubrum		Halorubrum lacusprofundi	hla
		Halorhabdus		Halorhabdus utahensis	hut
		Halomicrobium		Halomicrobium mukohataei	hmu
		Haloterrigena		Haloterrigena turkmenica	htu
		Natrialba		Natrialba magadii	nmg
		Haloferax		Haloferax volcanii	hvo
		Halalkalicoccus		Halalkalicoccus jeotgali	hje
		Halogeometricum		Halogeometricum borinquense	hbo
		Halopiger		Halopiger xanaduensis	hxa
		Thermoplasma		Thermoplasma acidophilum	tac
		Thermoplasma		Thermoplasma volcanium	tvo
		Picrophilus		Picrophilus torridus	pto
		Pyrococcus		Pyrococcus horikoshii	pho
				Pyrococcus abyssi	pab
Pyrococcus furiosus	pfu
Pyrococcus sp. NA2	pyn
Pyrococcus yayanosii	pya
Thermococcus		Thermococcus kodakaraensis	tko
		Thermococcus onnurineus	ton
		Thermococcus gammatolerans	tga
		Thermococcus sibiricus	tsi
		Thermococcus barophilus	tba
		Thermococcus sp. 4557	the
		Thermococcus sp. AM4	tha
Aciduliprofundum		Aciduliprofundum boonei	abi
Rice Cluster I		Uncultured methanogenic archaeon RC-I	rci
Crenarchaeota	Aeropyrum		Aeropyrum pernix	ape
	Staphylothermus		Staphylothermus marinus	smr
	Staphylothermus		Staphylothermus hellenicus	shc
	Ignicoccus		Ignicoccus hospitalis	iho
	Desulfurococcus		Desulfurococcus kamchatkensis	dka
	Desulfurococcus		Desulfurococcus mucosus	dmu
	Thermosphaera		Thermosphaera aggregans	tag
	Ignisphaera		Ignisphaera aggregans	iag
	Hyperthermus		Hyperthermus butylicus	hbu
	Pyrolobus		Pyrolobus fumarii	pfm
	Sulfolobus		Sulfolobus solfataricus	sso
			Sulfolobus tokodaii	sto
			Sulfolobus acidocaldarius	sai
			Sulfolobus islandicus L.S.2.15	sis
			Sulfolobus islandicus M.14.25	sia
			Sulfolobus islandicus M.16.27	sim
			Sulfolobus islandicus M.16.4	sid
			Sulfolobus islandicus Y.G.57.14	siy
			Sulfolobus islandicus Y.N.15.51	sin
			Sulfolobus islandicus L.D.8.5	sii
	Metallosphaera		Metallosphaera sedula	mse
	Metallosphaera		Metallosphaera cuprina	mcn
	Acidianus		Acidianus hospitalis	aho
	Pyrobaculum		Pyrobaculum aerophilum	pai
			Pyrobaculum islandicum	pis
			Pyrobaculum calidifontis	pcl
			Pyrobaculum arsenaticum	pas
			Pyrobaculum sp. 1860	pyr
	Caldivirga		Caldivirga maquilingensis	cma
	Thermoproteus		Thermoproteus neutrophilus	tne
			Thermoproteus uzoniensis	tuz
			Thermoproteus tenax	ttn
	Vulcanisaeta		Vulcanisaeta distributa	vdi
	Vulcanisaeta		Vulcanisaeta moutnovskia	vmo
	Thermofilum		Thermofilum pendens	tpe
	Acidilobus		Acidilobus saccharovorans	asc
Thaumarchaeota	Nitrosopumilus		Nitrosopumilus maritimus	nmr
Thaumarchaeota	Cenarchaeum		Cenarchaeum symbiosum A	csy
Nanoarchaeota	Nanoarchaeum		Nanoarchaeum equitans	neq
Korarchaeota	Korarchaeum		Candidatus Korarchaeum cryptofilum	kcr
Unclassified			Halophilic archaeon	hah