+F Repair protein KO #

  DNA Repair and Recombination Proteins - Lactobacillus salivarius UCC118

% # ! AEukaryotic Type B SSBR (single strand breaks repair) C Direct repair D LSL_0559 ada; O6-methylguanine-DNA methyltransferase K00567 E2.1.1.63; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LSL_1152 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LSL_0691 nth; endonuclease III K10773 NTH; endonuclease III [EC:4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch exicision repair) D Mismatch and loop recognition factors D MutS homologs specialized for meiosis D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C PSO4 complex C Modulation of nucleotide pools D LSL_1014 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 MUTT; 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] D LSL_1251 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23] # AProkaryotic Type B SSBR (single strand breaks repair) C Direct repair D LSL_0559 ada; O6-methylguanine-DNA methyltransferase K00567 E2.1.1.63; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E LSL_1152 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LSL_1082 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LSL_0489 nei; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LSL_0691 nth; endonuclease III K10773 NTH; endonuclease III [EC:4.2.99.18] D AP endonucleases E LSL_1490 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LSL_1091 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LSL_1348 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LSL_0488 polA; DNA polymerase I K02335 DPO1; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LSL_1174 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E LSL_1175 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E LSL_1098 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E LSL_1349 pcrA; ATP-dependent DNA helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E LSL_1377 rep; ATP-dependent DNA helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E LSL_1564 DNA helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E LSL_0488 polA; DNA polymerase I K02335 DPO1; DNA polymerase I [EC:2.7.7.7] E LSL_1348 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LSL_0197 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LSL_0198 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LSL_1409 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LSL_0341 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F LSL_0612 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LSL_1360 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] C MMR (mismatch exicision repair) D Mismatch and loop recognition factors E LSL_1128 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E LSL_1105 mutS; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LSL_1127 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LSL_0534 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LSL_0535 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LSL_0865 dnaE; DNA polymerase III subunit alpha K02337 DPO3A1; DNA polymerase III subunit alpha [EC:2.7.7.7] E LSL_0567 polC; DNA polymerase III PolC K03763 DPO3A2; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LSL_0002 dnaN; DNA polymerase III subunit beta K02338 DPO3B; DNA polymerase III subunit beta [EC:2.7.7.7] E LSL_0681 holA; DNA polymerase III subunit delta K02340 DPO3D1; DNA polymerase III subunit delta [EC:2.7.7.7] E LSL_1223 holB; DNA polymerase III subunit delta' K02341 DPO3D2; DNA polymerase III subunit delta' [EC:2.7.7.7] E LSL_1149 dnaQ; DNA-directed DNA polymerase III subunit epsilon K02342 DPO3E; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LSL_1228 dnaX; DNA polymerase III subunit gamma/tau K02343 DPO3G; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LSL_1348 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LSL_1349 pcrA; ATP-dependent DNA helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E LSL_1377 rep; ATP-dependent DNA helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E LSL_1564 DNA helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E LSL_0008 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LSL_0728 recD; exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LSL_1130 recA; recombinase A K03553 recA; recombination protein RecA E LSL_1126 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12] E LSL_1125 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12] E LSL_0613b primosomal protein n-prim K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] E LSL_1369 sbcC; exonuclease K03546 sbcC; exonuclease SbcC E LSL_1370 sbcD; exonuclease K03547 sbcD; exonuclease SbcD D RecFOR pathway proteins E LSL_1130 recA; recombinase A K03553 recA; recombination protein RecA E LSL_1250 radA; DNA repair protein RadA K04485 sms; DNA repair protein RadA/Sms E LSL_0004 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E LSL_0622 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12] E LSL_1091 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LSL_0894 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E LSL_1226 recR; recombination protein RecR K06187 recR; recombination protein RecR E LSL_0539 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E LSL_0932 recU; Holliday junction-specific endonuclease K03700 recU; recombination protein U E LSL_1126 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12] E LSL_1125 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12] D AddAB pathway proteins E LSL_1607 ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:3.1.-.- 3.6.4.12] E LSL_1608 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:3.1.-.- 3.6.4.12] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LSL_0006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.99.1.3] F LSL_0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.99.1.3] F LSL_0720 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.99.1.2] E Supressor F LSL_0885 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F LSL_1774 himA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LSL_1091 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LSL_0894 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F LSL_1226 recR; recombination protein RecR K06187 recR; recombination protein RecR E Facilitator E Supressor F LSL_0902 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12] F LSL_1174 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F LSL_1175 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LSL_1162 dinP; DNA polymerase IV K02346 DPO4; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D LSL_1130 recA; recombinase A K03553 recA; recombination protein RecA D LSL_0540 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D LSL_0539 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D LSL_0008 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LSL_0686 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12] C Modulation of nucleotide pools D LSL_1014 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 MUTT; 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] D LSL_1251 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23] D LSL_1232 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LSL_1233 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 2, 2013