+F Repair protein KO #

  DNA Repair and Recombination Proteins - Prevotella melaninogenica

% # ! AEukaryotic Type B SSBR (single strand breaks repair) C Direct repair D HMPREF0659_A6448 6-O-methylguanine DNA methyltransferase K00567 E2.1.1.63; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HMPREF0659_A5191 ung_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF0659_A5412 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.-] E HMPREF0659_A6668 nth; endonuclease III K10773 NTH; endonuclease III [EC:4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch exicision repair) D Mismatch and loop recognition factors D MutS homologs specialized for meiosis D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C PSO4 complex C Modulation of nucleotide pools D HMPREF0659_A5540 mutator MutT protein K03574 MUTT; 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] D HMPREF0659_A6246 dut; dUTP diphosphatase K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23] # AProkaryotic Type B SSBR (single strand breaks repair) C Direct repair D HMPREF0659_A6448 6-O-methylguanine DNA methyltransferase K00567 E2.1.1.63; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HMPREF0659_A5191 ung_1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HMPREF0659_A5412 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.-] E HMPREF0659_A6668 nth; endonuclease III K10773 NTH; endonuclease III [EC:4.2.99.18] D AP endonucleases E HMPREF0659_A5467 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E HMPREF0659_A5960 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HMPREF0659_A5539 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HMPREF0659_A5036 polA; DNA-directed DNA polymerase K02335 DPO1; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HMPREF0659_A5874 uvrA_2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E HMPREF0659_A5869 uvrA_1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E HMPREF0659_A7124 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E HMPREF0659_A5041 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E HMPREF0659_A6764 putative ATP-dependent helicase PcrA K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E HMPREF0659_A6530 UvrD/REP helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E HMPREF0659_A5036 polA; DNA-directed DNA polymerase K02335 DPO1; DNA polymerase I [EC:2.7.7.7] E HMPREF0659_A5539 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HMPREF0659_A5300 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HMPREF0659_A5301 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HMPREF0659_A5342 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HMPREF0659_A6008 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] C MMR (mismatch exicision repair) D Mismatch and loop recognition factors E HMPREF0659_A5014 mutS_1; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E HMPREF0659_A6803 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HMPREF0659_A6170 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HMPREF0659_A5831 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HMPREF0659_A5830 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HMPREF0659_A5447 putative DNA polymerase III subunit alpha K02337 DPO3A1; DNA polymerase III subunit alpha [EC:2.7.7.7] E HMPREF0659_A5673 dnaN; DNA polymerase III, beta subunit K02338 DPO3B; DNA polymerase III subunit beta [EC:2.7.7.7] E HMPREF0659_A5975 holA; DNA polymerase III, delta subunit K02340 DPO3D1; DNA polymerase III subunit delta [EC:2.7.7.7] E HMPREF0659_A5422 hypothetical protein K02341 DPO3D2; DNA polymerase III subunit delta' [EC:2.7.7.7] E HMPREF0659_A5674 exonuclease K02342 DPO3E; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HMPREF0659_A6528 exonuclease K02342 DPO3E; DNA polymerase III subunit epsilon [EC:2.7.7.7] E HMPREF0659_A5995 dnaX; DNA polymerase III, subunit gamma and tau K02343 DPO3G; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HMPREF0659_A5539 ligA; DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HMPREF0659_A6764 putative ATP-dependent helicase PcrA K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E HMPREF0659_A6530 UvrD/REP helicase K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] E HMPREF0659_A5604 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HMPREF0659_A5555 recA; protein RecA K03553 recA; recombination protein RecA E HMPREF0659_A6107 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12] E HMPREF0659_A5079 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12] E HMPREF0659_A6842 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] E HMPREF0659_A5272 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] D RecFOR pathway proteins E HMPREF0659_A5555 recA; protein RecA K03553 recA; recombination protein RecA E HMPREF0659_A6927 radA; DNA repair protein RadA K04485 sms; DNA repair protein RadA/Sms E HMPREF0659_A6930 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E HMPREF0659_A5137 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12] E HMPREF0659_A7289 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12] E HMPREF0659_A6259 divergent AAA domain protein K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12] E HMPREF0659_A5960 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HMPREF0659_A5202 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HMPREF0659_A7398 recR; recombination protein RecR K06187 recR; recombination protein RecR E HMPREF0659_A5677 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HMPREF0659_A6107 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12] E HMPREF0659_A5079 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12] E HMPREF0659_A6842 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HMPREF0659_A6818 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.99.1.3] F HMPREF0659_A5195 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.99.1.3] F HMPREF0659_A5134 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.99.1.2] E Supressor F HMPREF0659_A6905 hup_3; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F HMPREF0659_A6833 putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F HMPREF0659_A6318 hup_1; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HMPREF0659_A5960 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HMPREF0659_A5202 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HMPREF0659_A7398 recR; recombination protein RecR K06187 recR; recombination protein RecR E Facilitator E Supressor F HMPREF0659_A5961 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12] F HMPREF0659_A6179 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12] F HMPREF0659_A5874 uvrA_2; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F HMPREF0659_A5869 uvrA_1; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F HMPREF0659_A7124 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HMPREF0659_A6467 DNA polymerase IV K02346 DPO4; DNA polymerase IV [EC:2.7.7.7] D HMPREF0659_A6797 ImpB/MucB/SamB family protein K03502 DPO5C; DNA polymerase V C Other SOS response factors D HMPREF0659_A5555 recA; protein RecA K03553 recA; recombination protein RecA D HMPREF0659_A5677 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HMPREF0659_A5604 single-strand binding family protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D HMPREF0659_A5540 mutator MutT protein K03574 MUTT; 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] D HMPREF0659_A6246 dut; dUTP diphosphatase K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23] D HMPREF0659_A5008 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HMPREF0659_A7405 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HMPREF0659_A5009 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 2, 2013