KEGG Orthology (KO) - Acidobacterium capsulatum

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     KO 
 09100 Metabolism

 





 09120 Genetic Information Processing





 







   09121 Transcription





 







   09122 Translation





 







   09123 Folding, sorting and degradation





 







   09124 Replication and repair





     03030 DNA replication [PATH:aca03030]





     03410 Base excision repair [PATH:aca03410]





     03420 Nucleotide excision repair [PATH:aca03420]





     03430 Mismatch repair [PATH:aca03430]





     03440 Homologous recombination [PATH:aca03440]





       ACP_1001 recJ; single-stranded-DNA-specific exonuclease RecJ
       ACP_3252 single-strand binding domain protein
       ACP_0958 ssb; single-strand binding protein
       ACP_1190 single-strand binding protein subfamily, putative
       ACP_0593 recO; DNA repair protein RecO
       ACP_0511 recR; recombination protein RecR
       ACP_3307 recA; recA protein
       ACP_3199 hypothetical protein
       ACP_1517 hypothetical protein
       ACP_2054 ruvA; Holliday junction DNA helicase RuvA
       ACP_2080 ruvB; Holliday junction DNA helicase RuvB
       ACP_0531 ruvC; crossover junction endodeoxyribonuclease RuvC
       ACP_1743 recG; ATP-dependent DNA helicase RecG
       ACP_2163 ATPase, AAA family
       ACP_3484 dnaE3; DNA polymerase III, alpha subunit
       ACP_2196 dnaN; DNA polymerase III, beta subunit
       ACP_0491 dnaX; DNA polymerase III, subunits gamma and tau
       ACP_1997 holA; DNA polymerase III, delta subunit
       ACP_2987 DNA polymerase III, delta prime subunit
       ACP_0611 priA; primosomal protein N'



K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]





     03450 Non-homologous end-joining [PATH:aca03450]





     03460 Fanconi anemia pathway





 







   09126 Chromosome





 







   09125 Information processing in viruses





 







 09130 Environmental Information Processing





 







 09140 Cellular Processes





 







 09150 Organismal Systems





 







 09160 Human Diseases





 







 09180 Brite Hierarchies





 







   09181 Protein families: metabolism





 







   09182 Protein families: genetic information processing





     03000 Transcription factors [BR:aca03000]





     03021 Transcription machinery [BR:aca03021]





     03019 Messenger RNA biogenesis [BR:aca03019]





     03041 Spliceosome





     03011 Ribosome [BR:aca03011]





     03009 Ribosome biogenesis [BR:aca03009]





     03016 Transfer RNA biogenesis [BR:aca03016]





     03012 Translation factors [BR:aca03012]





     03110 Chaperones and folding catalysts [BR:aca03110]





     04131 Membrane trafficking [BR:aca04131]





     04121 Ubiquitin system [BR:aca04121]





     03051 Proteasome





     03032 DNA replication proteins [BR:aca03032]





     03036 Chromosome and associated proteins [BR:aca03036]





     03400 DNA repair and recombination proteins [BR:aca03400]





       ACP_1875 phrB; deoxyribodipyrimidine photolyase
       ACP_2287 DNA-3-methyladenine glycosylase
       ACP_2019 A/G-specific adenine glycosylase, putative
       ACP_0707 nth; endonuclease III
       ACP_2978 hydrolase, NUDIX family
       ACP_2902 hydrolase, NUDIX family
       ACP_3395 dut; dUTP diphosphatase
       ACP_2459 ada; ADA regulatory protein
       ACP_0337 deoxyribodipyrimidine photolyase homolog
       ACP_0612 uracil-DNA glycosylase, family 4
       ACP_0794 putative uracil-DNA glycosylase, family 4
       ACP_1877 putative DNA-3-methyladenine glycosylase
       ACP_2261 mutM2; DNA-formamidopyrimidine glycosylase
       ACP_0800 putative formamidopyrimidine-DNA glycosylase
       ACP_1716 mutM1; DNA-formamidopyrimidine glycosylase
       ACP_1118 nfo; deoxyribonuclease IV (phage-T(4)-induced)
       ACP_1001 recJ; single-stranded-DNA-specific exonuclease RecJ
       ACP_1809 ligA; DNA ligase, NAD-dependent
       ACP_0166 uvrA1; excinuclease ABC, A subunit
       ACP_2896 uvrA2; excinuclease ABC, A subunit
       ACP_2786 uvrB; excinuclease ABC, B subunit
       ACP_1243 uvrC; excinuclease ABC, C subunit
       ACP_2624 excinuclease ABC, C subunit homolog
       ACP_1793 ATP-dependent DNA helicase, UvrD/REP family
       ACP_3244 helicase, UvrD/REP family
       ACP_2928 rpoB; DNA-directed RNA polymerase, beta subunit
       ACP_2929 rpoC; DNA-directed RNA polymerase, beta subunit
       ACP_1423 rpoA; DNA-directed RNA polymerase, alpha subunit
       ACP_0615 rpoZ; DNA-directed RNA polymerase, omega subunit
       ACP_2078 mfd; transcription-repair coupling factor
       ACP_0716 mutS; DNA mismatch repair protein MutS
       ACP_2271 MutS2 family protein
       ACP_1883 mutL; DNA mismatch repair protein MutL
       ACP_1736 xseA; exodeoxyribonuclease VII, large subunit
       ACP_1005 xseB; exodeoxyribonuclease VII, small subunit
       ACP_3484 dnaE3; DNA polymerase III, alpha subunit
       ACP_2196 dnaN; DNA polymerase III, beta subunit
       ACP_1997 holA; DNA polymerase III, delta subunit
       ACP_2987 DNA polymerase III, delta prime subunit
       ACP_0491 dnaX; DNA polymerase III, subunits gamma and tau
       ACP_3252 single-strand binding domain protein
       ACP_0958 ssb; single-strand binding protein
       ACP_1190 single-strand binding protein subfamily, putative
       ACP_3307 recA; recA protein
       ACP_3199 hypothetical protein
       ACP_1517 hypothetical protein
       ACP_2054 ruvA; Holliday junction DNA helicase RuvA
       ACP_2080 ruvB; Holliday junction DNA helicase RuvB
       ACP_0531 ruvC; crossover junction endodeoxyribonuclease RuvC
       ACP_0611 priA; primosomal protein N'
       ACP_1743 recG; ATP-dependent DNA helicase RecG
       ACP_2163 ATPase, AAA family
       ACP_0593 recO; DNA repair protein RecO
       ACP_0511 recR; recombination protein RecR
       ACP_0506 recN; DNA repair protein RecN
       ACP_0777 cas1; CRISPR-associated protein Cas1
       ACP_3505 Ku protein
       ACP_3506 putative DNA ligase, ATP-dependent
       ACP_2084 gyrA; DNA gyrase, A subunit
       ACP_2742 gyrB; DNA gyrase, B subunit
       ACP_3419 topA; DNA topoisomerase
       ACP_2030 DNA-binding protein HU
       ACP_3334 hupA2; DNA-binding protein HU 1
       ACP_0699 transcriptional regulator, Fis family
       ACP_1628 hupA1; DNA-binding protein HU 1
       ACP_0647 recQ; ATP-dependent DNA helicase RecQ
       ACP_1813 ImpB/MucB/SamB family protein
       ACP_0214 putative DNA polymerase IV
       ACP_0231 lexA; LexA repressor
       ACP_3198 hypothetical protein
       ACP_1518 conserved hypothetical protein
       ACP_1519 dnaE1; DNA polymerase III, alpha subunit
       ACP_3197 dnaE2; DNA polymerase III, alpha subunit
       ACP_1786 regulatory protein RecX
       ACP_1624 PHP domain protein
       ACP_1651 putative DnaQ family exonuclease/DinG family helicase
       ACP_1717 DEAD/DEAH box helicase domain protein
       ACP_2035 helicase, DEAD/DEAH domain protein
       ACP_1586 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
       ACP_2111 ribonucleoside-diphosphate reductase, alpha subunit
       ACP_2110 ribonucleoside-diphosphate reductase, beta subunit
       ACP_1066 DHH family/DHHA1 domain protein



K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]





     03029 Mitochondrial biogenesis [BR:aca03029]





 







   09183 Protein families: signaling and cellular processes





 







   09185 Viral protein families





 







   09184 RNA family





 







 09190 Not Included in Pathway or Brite













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Last updated: April 21, 2024