09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:agr03030]
03410 Base excision repair [PATH:agr03410]
AGROH133_13687 endonuclease III AGROH133_08336 ung; uracil-DNA glycosylase AGROH133_04473 mutY; A/G-specific adenine glycosylase AGROH133_11234 putative 3-methyladenine DNA glycosylase AGROH133_03484 mutM; Formamidopyrimidine-DNA glycosylase AGROH133_11881 DNA-3-methyladenine glycosidase II AGROH133_04197 tag; 3-methyladenine-DNA glycosylase I AGROH133_07642 putative DNA polymerase bacteriophage-type AGROH133_04935 putative DNA polymerase bacteriophage-type AGROH133_09191 xthA1; exodeoxyribonuclease III AGROH133_06640 exodeoxyribonuclease III AGROH133_02965 polA; DNA polymerase I AGROH133_06392 recJ; single-stranded-DNA-specific exonuclease AGROH133_07396 ligA; DNA ligase
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03420 Nucleotide excision repair [PATH:agr03420]
03430 Mismatch repair [PATH:agr03430]
03440 Homologous recombination [PATH:agr03440]
03450 Non-homologous end-joining [PATH:agr03450]
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:agr03000]
03021 Transcription machinery [BR:agr03021]
03019 Messenger RNA biogenesis [BR:agr03019]
03041 Spliceosome
03011 Ribosome [BR:agr03011]
03009 Ribosome biogenesis [BR:agr03009]
03016 Transfer RNA biogenesis [BR:agr03016]
03012 Translation factors [BR:agr03012]
03110 Chaperones and folding catalysts [BR:agr03110]
04131 Membrane trafficking [BR:agr04131]
04121 Ubiquitin system
03051 Proteasome [BR:agr03051]
03032 DNA replication proteins [BR:agr03032]
03036 Chromosome and associated proteins [BR:agr03036]
03400 DNA repair and recombination proteins [BR:agr03400]
AGROH133_05491 methylated-DNA-protein-cysteinemethyltransferase AGROH133_05489 DNA photolyase AGROH133_08336 ung; uracil-DNA glycosylase AGROH133_11234 putative 3-methyladenine DNA glycosylase AGROH133_04473 mutY; A/G-specific adenine glycosylase AGROH133_13687 endonuclease III AGROH133_11693 NTP pyrophosphatase, MutT family AGROH133_05105 nudF; ADP-ribose pyrophosphatase AGROH133_06924 mutT like protein AGROH133_03471 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase AGROH133_04692 ada; 6-O-methylguanine-DNA methyltransferase AGROH133_13691 6-O-methylguanine-DNA methyltransferase AGROH133_09452 deoxyribodipyrimidine photolyase-related protein AGROH133_07642 putative DNA polymerase bacteriophage-type AGROH133_04935 putative DNA polymerase bacteriophage-type AGROH133_11881 DNA-3-methyladenine glycosidase II AGROH133_04197 tag; 3-methyladenine-DNA glycosylase I AGROH133_03484 mutM; Formamidopyrimidine-DNA glycosylase AGROH133_09191 xthA1; exodeoxyribonuclease III AGROH133_06640 exodeoxyribonuclease III AGROH133_06392 recJ; single-stranded-DNA-specific exonuclease AGROH133_07396 ligA; DNA ligase AGROH133_02965 polA; DNA polymerase I AGROH133_06150 uvrA; excinuclease ABC subunit A AGROH133_07219 uvrB; excinuclease ABC subunit B AGROH133_05277 uvrC; excinuclease ABC subunit C AGROH133_07336 pcrA; DNA helicase II AGROH133_09817 ATP-dependent DNA helicase AGROH133_07166 rpoB; DNA-directed RNA polymerase beta chain protein AGROH133_07165 rpoC; DNA-directed RNA polymerase beta' chain AGROH133_07123 rpoA; DNA-directed RNA polymerase subunit alpha AGROH133_05018 rnpO; DNA-directed RNA polymerase subunit omega AGROH133_06780 mfd; transcription-repair coupling factor AGROH133_03521 mutS; DNA mismatch repair protein MutS AGROH133_04261 mutL; DNA mismatch repair protein AGROH133_03377 xseA; exodeoxyribonuclease VII large subunit AGROH133_04353 xseB; exodeoxyribonuclease small subunit AGROH133_05713 dnaE; DNA polymerase III alpha subunit AGROH133_03437 dnaN; DNA polymerase III beta subunit AGROH133_05246 holC; putative DNA polymerase III chi subunit AGROH133_09161 holA; putative DNA polymerase III, delta subunit AGROH133_06114 holB; DNA polymerase III, delta prime subunit AGROH133_10453 DNA polymerase III subunit epsilon AGROH133_02806 dnaQ; DNA polymerase III epsilon chain AGROH133_07381 DNA polymerase III, epsilon subunit AGROH133_02946 dnaX; DNA polymerase III subunits gamma and tau AGROH133_06149 ssb; Single-stranded DNA-binding protein AGROH133_07016 recA; recombinase A AGROH133_12031 Holliday junction ATP-dependent DNA helicase ruvA AGROH133_12030 Holliday junction DNA helicase RuvB AGROH133_12032 crossover junction endodeoxyribonuclease RuvC AGROH133_08829 priA; primosome assembly protein PriA AGROH133_05162 radA; DNA repair protein RadA AGROH133_02904 recF; recombination protein F AGROH133_06782 recG; ATP-dependent DNA helicase AGROH133_05033 recO; DNA repair protein RecO AGROH133_02943 recR; recombination protein RecR AGROH133_07404 recN; DNA repair protein recN AGROH133_02829 addA; ATP-dependent DNA helicase AGROH133_09973 exodeoxyribonuclease V, beta subunit AGROH133_02830 addB; double-strand break repair protein AddB AGROH133_04608 ATP-binding protein AGROH133_09756 putative DNA helicase protein AGROH133_09758 hypothetical protein AGROH133_14505 Ku family containing protein AGROH133_14506 Ku family containing protein AGROH133_14625 ATP-dependent DNA ligase AGROH133_09757 ATP-dependent DNA ligase AGROH133_14508 ATP-dependent DNA ligase AGROH133_06135 gyrA; DNA gyrase subunit A AGROH133_02818 gyrB; DNA gyrase subunit B AGROH133_05739 topA; DNA topoisomerase I AGROH133_12787 DNA topoisomerase AGROH133_05610 hupA; histone-like protein AGROH133_14652 DNA binding protein AGROH133_05414 ihfA; integration host factor subunit alpha AGROH133_03505 ihfB; integration host factor subunit beta AGROH133_02880 recQ; DNA helicase AGROH133_05716 dinP; DNA polymerase IV AGROH133_09818 DNA polymerase IV AGROH133_05913 lexA; LexA repressor AGROH133_10929 hypothetical protein AGROH133_14626 hypothetical protein AGROH133_10928 putative DNA polymerase protein AGROH133_14627 putative DNA polymerase protein AGROH133_10927 DNA polymerase III alpha subunit AGROH133_14628 DNA polymerase III, alpha chain AGROH133_12757 regulatory protein recX AGROH133_03785 lhr; large atp-dependent helicase-related protein AGROH133_06665 nrdE; ribonucleotide-diphosphate reductase subunit alpha AGROH133_02899 nrdE; ribonucleotide-diphosphate reductase subunit alpha AGROH133_02901 nrdF; ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14160 imuA; protein ImuA K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:agr03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Agrobacterium tumefaciens H13-3 KEGG Orthology (KO) - Agrobacterium tumefaciens H13-3