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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:aoe03030]
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03410 Base excision repair [PATH:aoe03410]
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03420 Nucleotide excision repair [PATH:aoe03420]
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03430 Mismatch repair [PATH:aoe03430]
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03440 Homologous recombination [PATH:aoe03440]
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 Clos_1716 single-stranded-DNA-specific exonuclease RecJ
Clos_1881 single-strand binding protein
Clos_0036 single-strand binding protein
Clos_0004 DNA replication and repair protein RecF
Clos_1253 DNA repair protein RecO
Clos_2854 recombination protein RecR
Clos_1542 recA protein
Clos_1206 DNA polymerase I
Clos_1726 Holliday junction DNA helicase RuvA
Clos_1725 Holliday junction DNA helicase RuvB
Clos_1727 crossover junction endodeoxyribonuclease RuvC
Clos_1441 ATP-dependent DNA helicase RecG
Clos_2814 putative transcriptional regulator
Clos_2526 helicase, RecD/TraA family
Clos_0583 DNA polymerase III, alpha subunit
Clos_1523 DNA polymerase III, alpha subunit
Clos_0002 DNA polymerase III, beta subunit
Clos_2856 DNA polymerase III, subunits gamma and tau
Clos_1224 DNA polymerase III, delta subunit
Clos_0062 DNA polymerase III, delta prime subunit
Clos_1426 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:aoe03000]
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03021 Transcription machinery [BR:aoe03021]
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03019 Messenger RNA biogenesis [BR:aoe03019]
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03041 Spliceosome [BR:aoe03041]
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03011 Ribosome [BR:aoe03011]
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03009 Ribosome biogenesis [BR:aoe03009]
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03016 Transfer RNA biogenesis [BR:aoe03016]
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03012 Translation factors [BR:aoe03012]
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03110 Chaperones and folding catalysts [BR:aoe03110]
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04131 Membrane trafficking [BR:aoe04131]
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04121 Ubiquitin system [BR:aoe04121]
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03051 Proteasome [BR:aoe03051]
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03032 DNA replication proteins [BR:aoe03032]
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03036 Chromosome and associated proteins [BR:aoe03036]
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03400 DNA repair and recombination proteins [BR:aoe03400]
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Clos_0145 methylated-DNA--protein-cysteine methyltransferase
Clos_0936 methylated-DNA--protein-cysteine methyltransferase
Clos_0642 uracil-DNA glycosylase
Clos_1158 DNA-3-methyladenine glycosylase
Clos_2291 A/G-specific adenine glycosylase
Clos_2450 8-oxoguanine DNA glycosylase domain protein
Clos_0910 endonuclease III
Clos_2356 DEAD_2 domain protein
Clos_2044 NUDIX hydrolase
Clos_2045 NUDIX hydrolase
Clos_2840 NUDIX hydrolase
Clos_1150 NUDIX hydrolase
Clos_2852 NUDIX hydrolase
Clos_0146 transcriptional regulator, AraC family
Clos_1797 DNA-3-methyladenine glycosylase I
Clos_2318 exodeoxyribonuclease III Xth
Clos_0337 apurinic endonuclease Apn1
Clos_1716 single-stranded-DNA-specific exonuclease RecJ
Clos_0550 DNA ligase, NAD-dependent
Clos_1206 DNA polymerase I
Clos_2257 excinuclease ABC, A subunit
Clos_1323 excinuclease ABC, A subunit
Clos_2258 excinuclease ABC, B subunit
Clos_2255 excinuclease ABC, C subunit
Clos_0358 Excinuclease ABC C subunit domain protein
Clos_0549 ATP-dependent DNA helicase PcrA
Clos_1817 UvrD/REP helicase
Clos_0691 UvrD/REP helicase
Clos_0484 DNA-directed RNA polymerase, beta subunit
Clos_0485 DNA-directed RNA polymerase, beta' subunit
Clos_0521 DNA-directed RNA polymerase, alpha subunit
Clos_1424 DNA-directed RNA polymerase, omega subunit
Clos_2642 transcription-repair coupling factor
Clos_1554 DNA mismatch repair protein MutS
Clos_1836 MutS2 family protein
Clos_0420 DNA mismatch repair protein MutS domain protein
Clos_2699 DNA mismatch repair protein MutS domain protein
Clos_1553 DNA mismatch repair protein MutL
Clos_1611 exodeoxyribonuclease VII, large subunit
Clos_1610 exodeoxyribonuclease VII, small subunit
Clos_0583 DNA polymerase III, alpha subunit
Clos_1523 DNA polymerase III, alpha subunit
Clos_0002 DNA polymerase III, beta subunit
Clos_1224 DNA polymerase III, delta subunit
Clos_0062 DNA polymerase III, delta prime subunit
Clos_2856 DNA polymerase III, subunits gamma and tau
Clos_1881 single-strand binding protein
Clos_0036 single-strand binding protein
Clos_2526 helicase, RecD/TraA family
Clos_1542 recA protein
Clos_1726 Holliday junction DNA helicase RuvA
Clos_1725 Holliday junction DNA helicase RuvB
Clos_1727 crossover junction endodeoxyribonuclease RuvC
Clos_1426 primosomal protein N'
Clos_2288 SMC domain protein
Clos_2289 nuclease SbcCD, D subunit
Clos_0457 DNA repair protein RadA
Clos_0004 DNA replication and repair protein RecF
Clos_1441 ATP-dependent DNA helicase RecG
Clos_2814 putative transcriptional regulator
Clos_1253 DNA repair protein RecO
Clos_2854 recombination protein RecR
Clos_1604 DNA repair protein RecN
Clos_2290 Recombination helicase AddA
Clos_2300 ATP-dependent nuclease subunit AddB
Clos_0007 DNA gyrase, A subunit
Clos_0006 DNA gyrase, B subunit
Clos_1474 DNA topoisomerase I
Clos_2637 histone family protein DNA-binding protein
Clos_0979 ATP-dependent DNA helicase RecQ
Clos_1678 DNA-directed DNA polymerase
Clos_1549 SOS-response transcriptional repressor, LexA
Clos_1601 regulatory protein RecX
Clos_1530 phosphoesterase RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:aoe03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Alkaliphilus oremlandii