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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:apv03030]
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03410 Base excision repair [PATH:apv03410]
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03420 Nucleotide excision repair [PATH:apv03420]
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03430 Mismatch repair [PATH:apv03430]
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03440 Homologous recombination [PATH:apv03440]
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Apar_0519 single-stranded-DNA-specific exonuclease RecJ
Apar_0020 single-strand binding protein
Apar_0570 single-strand binding protein
Apar_0004 DNA replication and repair protein RecF
Apar_0790 DNA repair protein RecO
Apar_0117 recombination protein RecR
Apar_0779 recA protein
Apar_1104 DNA polymerase I
Apar_0894 Holliday junction DNA helicase RuvA
Apar_0893 Holliday junction DNA helicase RuvB
Apar_0895 crossover junction endodeoxyribonuclease RuvC
Apar_0860 helicase domain protein
Apar_0898 DNA polymerase III, alpha subunit
Apar_0003 DNA polymerase III, beta subunit
Apar_0115 DNA polymerase III, subunits gamma and tau
Apar_0803 DNA polymerase III, delta subunit
Apar_1091 DNA-directed DNA polymerase
Apar_0549 DNA polymerase III, epsilon subunit
Apar_0869 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:apv03000]
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03021 Transcription machinery [BR:apv03021]
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03019 Messenger RNA biogenesis [BR:apv03019]
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03041 Spliceosome
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03011 Ribosome [BR:apv03011]
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03009 Ribosome biogenesis [BR:apv03009]
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03016 Transfer RNA biogenesis [BR:apv03016]
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03012 Translation factors [BR:apv03012]
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03110 Chaperones and folding catalysts [BR:apv03110]
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04131 Membrane trafficking [BR:apv04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:apv03051]
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03032 DNA replication proteins [BR:apv03032]
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03036 Chromosome and associated proteins [BR:apv03036]
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03400 DNA repair and recombination proteins [BR:apv03400]
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Apar_0611 DNA-3-methyladenine glycosylase
Apar_0121 HhH-GPD family protein
Apar_0123 endonuclease III
Apar_0634 NUDIX hydrolase
Apar_0767 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Apar_0444 Uracil-DNA glycosylase superfamily
Apar_1244 phage SPO1 DNA polymerase-related protein
Apar_0110 exodeoxyribonuclease III Xth
Apar_0735 apurinic endonuclease Apn1
Apar_0519 single-stranded-DNA-specific exonuclease RecJ
Apar_1111 DNA ligase, NAD-dependent
Apar_1104 DNA polymerase I
Apar_0941 excinuclease ABC, A subunit
Apar_0946 excinuclease ABC, B subunit
Apar_0938 excinuclease ABC, C subunit
Apar_0360 Superfamily I DNA and RNA helicase-like protein
Apar_0382 UvrD/REP helicase
Apar_1170 DNA-directed RNA polymerase, beta subunit
Apar_1169 DNA-directed RNA polymerase, beta' subunit
Apar_1133 DNA-directed RNA polymerase, alpha subunit
Apar_0807 hypothetical protein
Apar_0124 transcription-repair coupling factor
Apar_0641 exodeoxyribonuclease VII, large subunit
Apar_0642 exodeoxyribonuclease VII, small subunit
Apar_0471 hypothetical protein
Apar_0898 DNA polymerase III, alpha subunit
Apar_0003 DNA polymerase III, beta subunit
Apar_0803 DNA polymerase III, delta subunit
Apar_1091 DNA-directed DNA polymerase
Apar_0549 DNA polymerase III, epsilon subunit
Apar_0115 DNA polymerase III, subunits gamma and tau
Apar_0020 single-strand binding protein
Apar_0570 single-strand binding protein
Apar_0779 recA protein
Apar_0894 Holliday junction DNA helicase RuvA
Apar_0893 Holliday junction DNA helicase RuvB
Apar_0895 crossover junction endodeoxyribonuclease RuvC
Apar_0869 primosomal protein N'
Apar_0004 DNA replication and repair protein RecF
Apar_0860 helicase domain protein
Apar_0790 DNA repair protein RecO
Apar_0117 recombination protein RecR
Apar_0474 DNA repair protein RecN
Apar_0007 DNA gyrase, A subunit
Apar_0006 DNA gyrase, B subunit
Apar_1093 DNA topoisomerase type IA central domain protein
Apar_0687 DNA-directed DNA polymerase
Apar_1117 UMUC domain protein DNA-repair protein
Apar_0770 SOS-response transcriptional repressor, LexA
Apar_0551 transcriptional regulator, XRE family
Apar_0778 regulatory protein RecX
Apar_1359 DNA polymerase III, epsilon subunit
Apar_0828 phosphoesterase RecJ domain protein
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K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:apv03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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