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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bav03030]
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 BAV2931 dnaQ; DNA polymerase III, epsilon chain
BAV2508 putative exonuclease
BAV2239 dnaE; DNA polymerase III alpha subunit
BAV0914 dnaX; DNA polymerase III subunit Tau
BAV1765 holB; DNA polymerase III, delta' subunit
BAV2494 holA; DNA polymerase III, delta subunit
BAV1136 holC; DNA polymerase III, chi subunit
BAV3411 dnaN; DNA polymerase III, beta chain
BAV2170 dnaB; replicative DNA helicase
BAV2330 dnaG; DNA primase
BAV0080 ssb; single-strand binding protein
BAV2934 rnhA; ribonuclease HI
BAV1748 rnhB; ribonuclease HII
BAV2388 polA; DNA polymerase I
BAV1072 ligA; DNA ligase
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K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:bav03410]
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03420 Nucleotide excision repair [PATH:bav03420]
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03430 Mismatch repair [PATH:bav03430]
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BAV2590 mutS; DNA mismatch repair protein
BAV0725 mutL; DNA mismatch repair protein
BAV1417 uvrD; DNA helicase II
BAV2545 DNA helicase
BAV0367 conserved hypothetical phage protein
BAV2097 xseA; exodeoxyribonuclease VII large subunit
BAV2179 xseB; exodeoxyribonuclease VII small subunit
BAV1520 recJ; single-stranded-DNA-specific exonuclease
BAV0080 ssb; single-strand binding protein
BAV2239 dnaE; DNA polymerase III alpha subunit
BAV3411 dnaN; DNA polymerase III, beta chain
BAV0914 dnaX; DNA polymerase III subunit Tau
BAV2494 holA; DNA polymerase III, delta subunit
BAV1765 holB; DNA polymerase III, delta' subunit
BAV2931 dnaQ; DNA polymerase III, epsilon chain
BAV2508 putative exonuclease
BAV1136 holC; DNA polymerase III, chi subunit
BAV1072 ligA; DNA ligase
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K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03440 Homologous recombination [PATH:bav03440]
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BAV1520 recJ; single-stranded-DNA-specific exonuclease
BAV0080 ssb; single-strand binding protein
BAV1133 recO; DNA repair protein
BAV0916 recR; recombination protein
BAV2309 recA; RecA protein (recombinase A)
BAV2388 polA; DNA polymerase I
BAV2778 ruvA; holliday junction DNA helicase
BAV2780 ruvB; holliday junction DNA helicase
BAV2777 ruvC; crossover junction endodeoxyribonuclease
BAV1920 recG; ATP-dependent DNA helicase
BAV0409 Hypothetical phage protein
BAV2239 dnaE; DNA polymerase III alpha subunit
BAV3411 dnaN; DNA polymerase III, beta chain
BAV0914 dnaX; DNA polymerase III subunit Tau
BAV2494 holA; DNA polymerase III, delta subunit
BAV1765 holB; DNA polymerase III, delta' subunit
BAV2931 dnaQ; DNA polymerase III, epsilon chain
BAV2508 putative exonuclease
BAV1136 holC; DNA polymerase III, chi subunit
BAV3210 priA; primosomal protein N'
BAV2174 priB; putative primosomal replication protein
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bav03000]
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03021 Transcription machinery [BR:bav03021]
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03019 Messenger RNA biogenesis [BR:bav03019]
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03041 Spliceosome
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03011 Ribosome [BR:bav03011]
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03009 Ribosome biogenesis [BR:bav03009]
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03016 Transfer RNA biogenesis [BR:bav03016]
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03012 Translation factors [BR:bav03012]
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03110 Chaperones and folding catalysts [BR:bav03110]
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04131 Membrane trafficking [BR:bav04131]
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04121 Ubiquitin system [BR:bav04121]
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03051 Proteasome [BR:bav03051]
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03032 DNA replication proteins [BR:bav03032]
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BAV2934 rnhA; ribonuclease HI
BAV1283 putative phage methyltransferase
BAV2121 hupB; DNA-binding protein Hu-beta
BAV2065 ihfA; integration host factor alpha-subunit
BAV1355 ihfB; integration host factor beta-subunit
BAV3412 dnaA; chromosomal replication initiator protein
BAV2170 dnaB; replicative DNA helicase
BAV2330 dnaG; DNA primase
BAV0080 ssb; single-strand binding protein
BAV2239 dnaE; DNA polymerase III alpha subunit
BAV3411 dnaN; DNA polymerase III, beta chain
BAV1136 holC; DNA polymerase III, chi subunit
BAV2494 holA; DNA polymerase III, delta subunit
BAV1765 holB; DNA polymerase III, delta' subunit
BAV2931 dnaQ; DNA polymerase III, epsilon chain
BAV2508 putative exonuclease
BAV0914 dnaX; DNA polymerase III subunit Tau
BAV1748 rnhB; ribonuclease HII
BAV2388 polA; DNA polymerase I
BAV1072 ligA; DNA ligase
BAV0722 conserved hypothetical protein
BAV1347 gyrA; DNA gyrase subunit A
BAV3410 gyrB; DNA gyrase subunit B
BAV2376 parC; topoisomerase IV subunit A
BAV2378 parE; topoisomerase IV subunit B
BAV3380 topB; DNA topoisomerase III
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K10763 hda; DnaA-homolog protein
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:bav03036]
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03400 DNA repair and recombination proteins [BR:bav03400]
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BAV3160 ogt; methylated-DNA--protein-cysteine methyltransferase
BAV1830 phrB; deoxyribodipyrimidine photo-lyase
BAV1591 deoxyribodipyrimidine photo-lyase
BAV0172 ung; uracil-DNA glycosylase
BAV2249 putative DNA-3-methyladenine glycosylase
BAV3063 mutY; A/G-specific adenine glycosylase
BAV1091 nth; endonuclease III
BAV3038 putative NUDIX hydrolase
BAV1402 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
BAV3120 ada; Ada regulatory protein (methylated-dna--protein-cysteine methyltransferase)
BAV1590 putative DNA photolyase
BAV3121 alkB; alkylated DNA repair protein
BAV1068 uracil-DNA glycosylase
BAV2215 DNA-3-methyladenine glycosylase
BAV2561 alkA; DNA-3-methyladenine glycosylase
BAV2848 tag; DNA-3-methyladenine glycosylase
BAV0533 mutM; formamidopyrimidine-DNA glycosylase
BAV1631 xthA; exodeoxyribonuclease III
BAV3181 crc; catabolite repression control protein
BAV1520 recJ; single-stranded-DNA-specific exonuclease
BAV1072 ligA; DNA ligase
BAV2388 polA; DNA polymerase I
BAV0078 uvrA; excinuclease ABC subunit A
BAV2808 putative excinuclease ABC subunit
BAV1505 uvrB; excinuclease ABC subunit B
BAV2456 uvrC; excinuclease ABC, subunit C
BAV1592 cho; excinuclease
BAV1417 uvrD; DNA helicase II
BAV2545 DNA helicase
BAV0367 conserved hypothetical phage protein
BAV0013 rpoB; DNA-directed RNA polymerase beta chain
BAV0014 rpoC; DNA-directed RNA polymerase beta' chain
BAV0060 rpoA; DNA-directed RNA polymerase alpha chain
BAV1956 rpoZ; DNA-directed RNA polymerase omega chain
BAV1061 mfd; transcription-repair coupling factor
BAV2590 mutS; DNA mismatch repair protein
BAV0725 mutL; DNA mismatch repair protein
BAV2097 xseA; exodeoxyribonuclease VII large subunit
BAV2179 xseB; exodeoxyribonuclease VII small subunit
BAV2239 dnaE; DNA polymerase III alpha subunit
BAV3411 dnaN; DNA polymerase III, beta chain
BAV1136 holC; DNA polymerase III, chi subunit
BAV2494 holA; DNA polymerase III, delta subunit
BAV1765 holB; DNA polymerase III, delta' subunit
BAV2931 dnaQ; DNA polymerase III, epsilon chain
BAV2508 putative exonuclease
BAV0914 dnaX; DNA polymerase III subunit Tau
BAV0080 ssb; single-strand binding protein
BAV2309 recA; RecA protein (recombinase A)
BAV2778 ruvA; holliday junction DNA helicase
BAV2780 ruvB; holliday junction DNA helicase
BAV2777 ruvC; crossover junction endodeoxyribonuclease
BAV1307 Putative phage endonuclease
BAV0415 phage-related protein
BAV3210 priA; primosomal protein N'
BAV2174 priB; putative primosomal replication protein
BAV2413 radA; DNA repair protein
BAV1920 recG; ATP-dependent DNA helicase
BAV0409 Hypothetical phage protein
BAV1133 recO; DNA repair protein
BAV0916 recR; recombination protein
BAV2723 recN; DNA repair protein
BAV2313 rdgC; recombination associated protein
BAV0396 Putative phage-related recombination associated protein
BAV1287 Putative phage recombinase
BAV1347 gyrA; DNA gyrase subunit A
BAV3410 gyrB; DNA gyrase subunit B
BAV2121 hupB; DNA-binding protein Hu-beta
BAV1424 recT; phage recombination protein
BAV0398 recT; phage recombination protein
BAV2775 fis; DNA-binding protein
BAV2065 ihfA; integration host factor alpha-subunit
BAV1355 ihfB; integration host factor beta-subunit
BAV2781 recQ; ATP-dependent DNA helicase
BAV2155 bph3; DNA-binding protein (histone)
BAV2034 dinB; DNA polymerase IV
BAV1503 lexA; LexA repressor
BAV2027 conserved hypothetical protein
BAV2028 conserved hypothetical protein
BAV2029 dnaE2; putative DNA polymerase III alpha subunit
BAV2308 recX; regulatory protein
BAV3209 rep; ATP-dependent DNA helicase
BAV1214 probable ATP-dependent helicase
BAV2982 nrdA; ribonucleoside-diphosphate reductase alpha chain
BAV2983 nrdB; ribonucleoside-diphosphate reductase beta chain
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K05984 cho; excinuclease Cho [EC:3.1.25.-]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K02686 priB; primosomal replication protein N
K04485 radA; DNA repair protein RadA/Sms
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03554 rdgC; recombination associated protein RdgC
K03554 rdgC; recombination associated protein RdgC
K03554 rdgC; recombination associated protein RdgC
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K07455 recT; recombination protein RecT
K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03746 hns; DNA-binding protein H-NS
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:bav03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Bordetella avium