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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bbb03030]
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03410 Base excision repair [PATH:bbb03410]
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03420 Nucleotide excision repair [PATH:bbb03420]
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03430 Mismatch repair [PATH:bbb03430]
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03440 Homologous recombination [PATH:bbb03440]
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 BIF_00472 single-stranded DNA-binding protein
BIF_01053 single-stranded DNA-binding protein
BIF_01454 recF; DNA replication and repair protein RecF
BIF_00372 recO; DNA repair protein RecO
BIF_01499 recR; recombination protein RecR
BIF_00053 recA; recombinase RecA
BIF_00563 ruvA; Holliday junction branch migration protein RuvA
BIF_00229 ruvB; Holliday junction branch migration DNA helicase RuvB
BIF_00562 ruvC; crossover junction endodeoxyribonuclease RuvC
BIF_00398 ATP-dependent DNA helicase RecG
BIF_01689 winged helix-turn-helix transcriptional regulator
BIF_00801 dnaE; DNA polymerase III subunit alpha
BIF_01452 dnaN; DNA polymerase III subunit beta
BIF_01500 dnaX; DNA polymerase III subunit gamma/tau
BIF_00697 holA; DNA polymerase III subunit delta
BIF_00203 DNA polymerase III subunit delta'
BIF_02011 3'-5' exonuclease
BIF_01283 primosomal protein N'
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K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bbb03000]
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03021 Transcription machinery [BR:bbb03021]
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03019 Messenger RNA biogenesis [BR:bbb03019]
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03041 Spliceosome
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03011 Ribosome [BR:bbb03011]
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03009 Ribosome biogenesis [BR:bbb03009]
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03016 Transfer RNA biogenesis [BR:bbb03016]
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03012 Translation factors [BR:bbb03012]
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03110 Chaperones and folding catalysts [BR:bbb03110]
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04131 Membrane trafficking [BR:bbb04131]
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04121 Ubiquitin system [BR:bbb04121]
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03051 Proteasome [BR:bbb03051]
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03032 DNA replication proteins [BR:bbb03032]
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03036 Chromosome and associated proteins [BR:bbb03036]
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03400 DNA repair and recombination proteins [BR:bbb03400]
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BIF_01584 methylated-DNA--[protein]-cysteine S-methyltransferase
BIF_01164 uracil-DNA glycosylase
BIF_00775 A/G-specific adenine glycosylase
BIF_01112 nth; endonuclease III
BIF_01309 (deoxy)nucleoside triphosphate pyrophosphohydrolase
BIF_02137 NUDIX hydrolase
BIF_02700 NUDIX hydrolase
BIF_01790 dut; dUTP diphosphatase
BIF_01328 endonuclease/exonuclease/phosphatase family protein
BIF_00179 ligA; NAD-dependent DNA ligase LigA
BIF_00976 uvrA; excinuclease ABC subunit UvrA
BIF_01691 excinuclease ABC subunit UvrA
BIF_00301 uvrB; excinuclease ABC subunit UvrB
BIF_00475 uvrC; excinuclease ABC subunit UvrC
BIF_02176 ATP-dependent helicase
BIF_00621 UvrD-helicase domain-containing protein
BIF_00428 exodeoxyribonuclease V subunit gamma
BIF_01034 rpoB; DNA-directed RNA polymerase subunit beta
BIF_00211 DNA-directed RNA polymerase subunit beta'
BIF_01155 DNA-directed RNA polymerase subunit alpha
BIF_01204 DNA-directed RNA polymerase subunit omega
BIF_01169 mfd; transcription-repair coupling factor
BIF_00285 exodeoxyribonuclease VII large subunit
BIF_01935 exodeoxyribonuclease VII small subunit
BIF_00801 dnaE; DNA polymerase III subunit alpha
BIF_01452 dnaN; DNA polymerase III subunit beta
BIF_00697 holA; DNA polymerase III subunit delta
BIF_00203 DNA polymerase III subunit delta'
BIF_02011 3'-5' exonuclease
BIF_01500 dnaX; DNA polymerase III subunit gamma/tau
BIF_00472 single-stranded DNA-binding protein
BIF_01053 single-stranded DNA-binding protein
BIF_01536 vsr; DNA mismatch endonuclease Vsr
BIF_00005 very short patch repair endonuclease
BIF_00053 recA; recombinase RecA
BIF_00563 ruvA; Holliday junction branch migration protein RuvA
BIF_00229 ruvB; Holliday junction branch migration DNA helicase RuvB
BIF_00562 ruvC; crossover junction endodeoxyribonuclease RuvC
BIF_01283 primosomal protein N'
BIF_00209 radA; DNA repair protein RadA
BIF_01454 recF; DNA replication and repair protein RecF
BIF_00398 ATP-dependent DNA helicase RecG
BIF_01689 winged helix-turn-helix transcriptional regulator
BIF_00372 recO; DNA repair protein RecO
BIF_01499 recR; recombination protein RecR
BIF_00725 recN; DNA repair protein RecN
BIF_01985 CRISPR-associated endonuclease Cas4/Cas1
BIF_00866 DNA topoisomerase IV subunit A
BIF_01457 gyrA; DNA gyrase subunit A
BIF_01033 type IIA DNA topoisomerase subunit B
BIF_01456 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B
BIF_01023 topA; type I DNA topoisomerase
BIF_01345 HU family DNA-binding protein
BIF_01869 recQ; DNA helicase RecQ
BIF_00961 dinB; DNA polymerase IV
BIF_01090 type VI secretion protein ImpB
BIF_00542 lexA; transcriptional repressor LexA
BIF_00423 regulatory protein RecX
BIF_00683 DEAD/DEAH box helicase
BIF_01427 NUDIX hydrolase
BIF_01788 NUDIX hydrolase
BIF_01349 nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha
BIF_01348 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:bbb03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Bifidobacterium animalis subsp. lactis BB-12