KEGG Orthology (KO) - Bacillus licheniformis ATCC 14580

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
 
   09124 Replication and repair
     03030 DNA replication [PATH:bli03030]
     03410 Base excision repair [PATH:bli03410]
     03420 Nucleotide excision repair [PATH:bli03420]
     03430 Mismatch repair [PATH:bli03430]
     03440 Homologous recombination [PATH:bli03440]
       BL01127 recJ; RecJ exonuclease
       BL00099 ssb; single-strand DNA-binding protein
       BL02493 ywpH; Single-strand binding protein
       BL00991 ssb; single-strand DNA-binding protein
       BL00079 recF; DNA repair RecF
       BL03675 recO; RecO
       BL02359 recR; DNA repair protein RecR
       BL05164 recA; multifunctional SOS repair regulator
       BL00394 polA; DNA polymerase I
       BL01144 ruvA; Holliday junction DNA helicase
       BL01143 ruvB; Holliday junction DNA helicase
       BL02311 recG; ATP-dependent DNA helicase
       BL02037 yrrC; putative exodeoxyribonuclease V alpha subunit YrrC
       BL00408 dnaE; DNA polymerase III (alpha subunit)
       BL01234 polC; DNA polymerase III (alpha subunit)
       BL00077 dnaN; DNA polymerase III (beta subunit)
       BL02357 dnaX; DNA polymerase III (gamma and tau subunits)
       BL02088 holA; DNA polymerase III clamp loader subunit, C-terminal
       BL00541 holB; DNA polymerase III (delta' subunit)
       BL02296 priA; primosomal replication factor Y (primosomal protein N')
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
     03450 Non-homologous end-joining [PATH:bli03450]
     03460 Fanconi anemia pathway
 
   09126 Chromosome
 
   09125 Information processing in viruses
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:bli03000]
     03021 Transcription machinery [BR:bli03021]
     03019 Messenger RNA biogenesis [BR:bli03019]
     03041 Spliceosome
     03011 Ribosome [BR:bli03011]
     03009 Ribosome biogenesis [BR:bli03009]
     03016 Transfer RNA biogenesis [BR:bli03016]
     03012 Translation factors [BR:bli03012]
     03110 Chaperones and folding catalysts [BR:bli03110]
     04131 Membrane trafficking [BR:bli04131]
     04121 Ubiquitin system [BR:bli04121]
     03051 Proteasome [BR:bli03051]
     03032 DNA replication proteins [BR:bli03032]
     03036 Chromosome and associated proteins [BR:bli03036]
     03400 DNA repair and recombination proteins [BR:bli03400]
       BL03537 ogt; O6-methylguanine DNA alkyltransferase
       BL03895 ung; uracil-DNA glycosylase
       BL05369 yxlJ; Methylpurine-DNA glycosylase (MPG)
       BL03038 yfhQ; putative A/G-specific adenine glycosylase YfhQ
       BL02743 nth; endonuclease III
       BL03416 yvcI; NUDIX hydrolase
       BL05395 putative Phosphohydrolase
       BL03288 ytkD; putative hydrolase YtkD
       BL01963 mutT; mutator protein
       BL05281 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family)
       BL00477 adaB; O6-methylguanine-DNA methyltransferase
       BL03090 yfjP; putative DNA glycosylase
       BL00393 mutM; formamidopyrimidine-DNA glycosidase
       BL03699 nfo; type IV apurinic/apyrimidinic endonuclease
       BL01127 recJ; RecJ exonuclease
       BL00589 ligA; DNA ligase
       BL00394 polA; DNA polymerase I
       BL03395 uvrA; excinuclease ABC (subunit A)
       BL03394 uvrB; excinuclease ABC (subunit B)
       BL00325 uvrC; excinuclease ABC (subunit C)
       BL00588 pcrA; ATP-dependent DNA helicase
       BL00699 yvgS; putative DNA helicase
       BL02667 yjcD; putative ATP-dependent DNA helicase YjcD
       BL02798 rpoB; RNA polymerase (beta subunit)
       BL02626 rpoC; RNA polymerase (beta subunit)
       BL01025 rpoA; RNA polymerase (alpha subunit)
       BL05358 rpoE; RNA polymerase (delta subunit)
       BL02294 rpoZ; RNA polymerase, omega subunit
       BL00515 mfd; transcription-repair coupling factor
       BL03663 mutS; MutS
       BL00333 mutSB; DNA mismatch repair protein MutSB
       BL03664 mutL; MutL
       BL01526 xseA; Exonuclease VII, large subunit
       BL01525 xseB; Exonuclease VII, small subunit
       BL00408 dnaE; DNA polymerase III (alpha subunit)
       BL01234 polC; DNA polymerase III (alpha subunit)
       BL00077 dnaN; DNA polymerase III (beta subunit)
       BL02088 holA; DNA polymerase III clamp loader subunit, C-terminal
       BL00541 holB; DNA polymerase III (delta' subunit)
       BL02357 dnaX; DNA polymerase III (gamma and tau subunits)
       BL00099 ssb; single-strand DNA-binding protein
       BL02493 ywpH; Single-strand binding protein
       BL00991 ssb; single-strand DNA-binding protein
       BL02037 yrrC; putative exodeoxyribonuclease V alpha subunit YrrC
       BL05164 recA; multifunctional SOS repair regulator
       BL01144 ruvA; Holliday junction DNA helicase
       BL01143 ruvB; Holliday junction DNA helicase
       BL02296 priA; primosomal replication factor Y (primosomal protein N')
       BL01348 sbcC; ABC transporter, exonuclease SbcC
       BL01349 sbcD; exonuclease SbcD
       BL03262 radA; DNA repair protein RadA
       BL00079 recF; DNA repair RecF
       BL02311 recG; ATP-dependent DNA helicase
       BL03675 recO; RecO
       BL02359 recR; DNA repair protein RecR
       BL01520 recN; RecN
       BL02731 recU; RecU
       BL01350 addA; ATP-dependent deoxyribonuclease (subunit A)
       BL01351 addB; ATP-dependent deoxyribonuclease (subunit B)
       BL03627 ykoV; Cytochrome c heme-binding site protein
       BL03626 ykoU; ATP-dependent DNA ligase
       BL00082 gyrA; DNA gyrase (subunit A)
       BL00081 gyrB; DNA gyrase (subunit B)
       BL01281 topA; DNA topoisomerase I
       BL02787 hbs; non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component
       BL01003 yqaK; DNA binding, phage related protein
       BL01304 ATP-dependent DNA helicase
       BL02232 recQ; Hypothetical ATP-dependent DNA helicase RecQ
       BL01384 dinB1; UMUC-like DNA-repair protein DinB1
       BL00801 uvrX; UV-damage repair protein UvrX
       BL00127 lexA; transcriptional regulator
       BL03621 hypothetical phagelike protein
       BL03032 recX; conserved protein RecX
       BL00334 yshC; putative DNA polymerase YshC
       BL02749 dinG; ATP-dependent helicase
       BL05232 ypvA; Probable ATP-dependent helicase
       BL01192 nrdE; ribonucleoside-diphosphate reductase (major subunit)
       BL01193 nrdF; ribonucleoside-diphosphate reductase (minor subunit)
       BL00410 ytqI; YtqI
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:bli03029]
 
   09183 Protein families: signaling and cellular processes
 
   09185 Viral protein families
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: March 26, 2024