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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:bmi03030]
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03410 Base excision repair [PATH:bmi03410]
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BMEA_A0172 nth; endonuclease III
BMEA_A0530 mutY; A/G-specific adenine glycosylase
BMEA_A2244 mutM; formamidopyrimidine-DNA glycosylase
BMEA_A1701 HhH-GPD family protein
BMEA_B0185 DNA-3-methyladenine glycosylase I
BMEA_A0685 Uracil-DNA glycosylase superfamily protein
BMEA_A0658 uracil-DNA glycosylase, family 4
BMEA_A0911 exodeoxyribonuclease III Xth
BMEA_A2062 exodeoxyribonuclease III
BMEA_A0130 polA; DNA polymerase I
BMEA_A1316 recJ; single-stranded-DNA-specific exonuclease RecJ
BMEA_A1468 ligA; DNA ligase, NAD-dependent
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K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03420 Nucleotide excision repair [PATH:bmi03420]
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03430 Mismatch repair [PATH:bmi03430]
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03440 Homologous recombination [PATH:bmi03440]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:bmi03000]
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03021 Transcription machinery [BR:bmi03021]
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03019 Messenger RNA biogenesis [BR:bmi03019]
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03041 Spliceosome
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03011 Ribosome [BR:bmi03011]
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03009 Ribosome biogenesis [BR:bmi03009]
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03016 Transfer RNA biogenesis [BR:bmi03016]
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03012 Translation factors [BR:bmi03012]
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03110 Chaperones and folding catalysts [BR:bmi03110]
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04131 Membrane trafficking [BR:bmi04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:bmi03032]
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03036 Chromosome and associated proteins [BR:bmi03036]
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03400 DNA repair and recombination proteins [BR:bmi03400]
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BMEA_A0192 methylated-DNA--protein-cysteine methyltransferase
BMEA_A0530 mutY; A/G-specific adenine glycosylase
BMEA_A0172 nth; endonuclease III
BMEA_A1996 mutator MutT protein
BMEA_A1728 dut; dUTP diphosphatase
BMEA_A0405 methylated-DNA-protein-cysteine methyltransferase
BMEA_B0868 methylated-DNA-protein-cysteine methyltransferase
BMEA_B0507 alkylated DNA repair protein AlkB
BMEA_A0685 Uracil-DNA glycosylase superfamily protein
BMEA_A0658 uracil-DNA glycosylase, family 4
BMEA_A1701 HhH-GPD family protein
BMEA_B0185 DNA-3-methyladenine glycosylase I
BMEA_A2244 mutM; formamidopyrimidine-DNA glycosylase
BMEA_A0911 exodeoxyribonuclease III Xth
BMEA_A2062 exodeoxyribonuclease III
BMEA_A1316 recJ; single-stranded-DNA-specific exonuclease RecJ
BMEA_A1468 ligA; DNA ligase, NAD-dependent
BMEA_A0130 polA; DNA polymerase I
BMEA_A1150 uvrA; excinuclease ABC, A subunit
BMEA_A1563 uvrB; excinuclease ABC, B subunit
BMEA_A0735 uvrC; excinuclease ABC, C subunit
BMEA_A1461 ATP-dependent DNA helicase pcrA
BMEA_A1288 rpoB; DNA-directed RNA polymerase, beta subunit
BMEA_A1286 rpoC; DNA-directed RNA polymerase, beta' subunit
BMEA_A1253 rpoA; DNA-directed RNA polymerase, alpha subunit
BMEA_A0688 rpoZ; DNA-directed RNA polymerase, omega subunit
BMEA_B0553 mfd; transcription-repair coupling factor
BMEA_A0153 mutS; DNA mismatch repair protein MutS
BMEA_B0218 mutL; DNA mismatch repair protein MutL
BMEA_B0742 xseA; exodeoxyribonuclease VII, large subunit
BMEA_A0464 xseB; exodeoxyribonuclease VII, small subunit
BMEA_A0865 dnaE; DNA polymerase III, alpha subunit
BMEA_A0002 dnaN; DNA polymerase III, beta subunit
BMEA_A0726 DNA polymerase III chi subunit HolC
BMEA_A2118 holA; DNA polymerase III, delta subunit
BMEA_A1034 holB; DNA polymerase III, delta' subunit
BMEA_B0599 exonuclease, DNA polymerase III, epsilon subunit family protein
BMEA_B0991 Exonuclease RNase T and DNA polymerase III
BMEA_A2133 dnaQ; DNA polymerase III, epsilon subunit
BMEA_A0034 dnaX; DNA polymerase III, subunits gamma and tau
BMEA_A1148 ssb; single-strand binding protein
BMEA_A1246 recA; recA protein
BMEA_A1756 ruvA; Holliday junction DNA helicase RuvA
BMEA_A1755 ruvB; Holliday junction DNA helicase RuvB
BMEA_A1757 ruvC; crossover junction endodeoxyribonuclease RuvC
BMEA_A1854 priA; primosomal protein N'
BMEA_A0483 radA; DNA repair protein RadA
BMEA_A0003 recF; DNA replication and repair protein RecF
BMEA_B0555 recG; ATP-dependent DNA helicase RecG
BMEA_A0701 recO; DNA repair protein RecO
BMEA_A0032 recR; recombination protein RecR
BMEA_A1469 recN; DNA repair protein RecN
BMEA_A2164 addA; double-strand break repair helicase AddA
BMEA_A2163 addB; double-strand break repair protein AddB
BMEA_A0600 protein of unknown function DUF853 NPT hydrolase
BMEA_A1144 gyrA; DNA gyrase, A subunit
BMEA_A0132 gyrB; DNA gyrase, B subunit
BMEA_B0579 topA; DNA topoisomerase I
BMEA_A1151 DNA-binding protein HRL18
BMEA_A0816 ihfA; integration host factor, alpha subunit
BMEA_A0159 ihfB; integration host factor, beta subunit
BMEA_B0590 DNA polymerase IV
BMEA_A1188 lexA; LexA repressor
BMEA_A0074 Hypothetical protein, conserved
BMEA_A0073 Hypothetical protein, conserved
BMEA_A0072 dnaE; DNA polymerase III, alpha subunit
BMEA_B0805 Hypothetical protein, conserved
BMEA_B0316 ribonucleoside-diphosphate reductase, alpha subunit
BMEA_A1083 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
BMEA_B0317 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:bmi03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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