09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:bsi03030]
03410 Base excision repair [PATH:bsi03410]
03420 Nucleotide excision repair [PATH:bsi03420]
03430 Mismatch repair [PATH:bsi03430]
03440 Homologous recombination [PATH:bsi03440]
BS1330_I1266 recJ; single-stranded-DNA-specific exonuclease RecJ BS1330_I1098 single-stranded DNA-binding protein family BS1330_I0003 recF; recombination protein F BS1330_I0660 recO; DNA repair protein RecO BS1330_I0032 recR; recombination protein RecR BS1330_I1198 recA; recombinase A BS1330_I0123 polA; DNA polymerase I BS1330_I1697 ruvA; Holliday junction DNA helicase RuvA BS1330_I1696 ruvB; Holliday junction DNA helicase RuvB BS1330_I1698 ruvC; Holliday junction resolvase BS1330_II0576 recG; ATP-dependent DNA helicase RecG BS1330_I0821 dnaE; DNA polymerase III subunit alpha BS1330_I0002 dnaN; DNA polymerase III subunit beta BS1330_I0034 dnaX; DNA polymerase III subunits gamma and tau BS1330_I2051 holA; DNA polymerase III subunit delta BS1330_I0989 DNA polymerase III subunit delta' BS1330_II0620 exonuclease, putative BS1330_II0998 DNA polymerase III subunit epsilon BS1330_I2065 dnaQ; DNA polymerase III subunit epsilon BS1330_I0686 DNA polymerase III subunit chi BS1330_I1798 priA; primosome assembly protein PriA
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K03629 recF; DNA replication and repair protein RecF K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K02335 polA; DNA polymerase I [EC:2.7.7.7] K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:bsi03000]
03021 Transcription machinery [BR:bsi03021]
03019 Messenger RNA biogenesis [BR:bsi03019]
03041 Spliceosome
03011 Ribosome [BR:bsi03011]
03009 Ribosome biogenesis [BR:bsi03009]
03016 Transfer RNA biogenesis [BR:bsi03016]
03012 Translation factors [BR:bsi03012]
03110 Chaperones and folding catalysts [BR:bsi03110]
04131 Membrane trafficking [BR:bsi04131]
04121 Ubiquitin system
03051 Proteasome
03032 DNA replication proteins [BR:bsi03032]
03036 Chromosome and associated proteins [BR:bsi03036]
03400 DNA repair and recombination proteins [BR:bsi03400]
BS1330_I0185 ogt; methylated-DNA--protein-cysteine methyltransferase BS1330_I0494 mutY; A/G-specific adenine glycosylase BS1330_I0166 nth; endonuclease III BS1330_I1933 mutator mutT protein, putative BS1330_I1669 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase BS1330_II0882 ada regulatory protein, putative BS1330_I0369 ada; ada regulatory protein BS1330_II0528 alkB; alkylated DNA repair protein AlkB BS1330_I0644 phage SPO1 DNA polymerase-related protein BS1330_I0616 phage SPO1 DNA polymerase-related protein BS1330_I1640 base-excision DNA repair protein BS1330_II0182 tag; DNA-3-methyladenine glycosidase I BS1330_I2177 mutM; formamidopyrimidine-DNA glycosylase BS1330_I0869 xth-1; exodeoxyribonuclease III BS1330_I1998 xth-2; exodeoxyribonuclease III BS1330_I1266 recJ; single-stranded-DNA-specific exonuclease RecJ BS1330_I1414 ligA; NAD-dependent DNA ligase LigA BS1330_I0123 polA; DNA polymerase I BS1330_I1100 uvrA; excinuclease ABC subunit A BS1330_I1506 uvrB; excinuclease ABC subunit B BS1330_I0695 uvrC; excinuclease ABC subunit C BS1330_I1407 DNA helicase II BS1330_I1239 rpoB; DNA-directed RNA polymerase subunit beta BS1330_I1238 rpoC; DNA-directed RNA polymerase subunit beta' BS1330_I1205 rpoA; DNA-directed RNA polymerase subunit alpha BS1330_I0647 rpoZ; DNA-directed RNA polymerase subunit omega BS1330_II0574 mfd; transcription-repair coupling factor BS1330_I0147 mutS; DNA mismatch repair protein MutS BS1330_II0215 mutL; DNA mismatch repair protein BS1330_II0757 xseA; exodeoxyribonuclease VII large subunit BS1330_I0432 xseB; exodeoxyribonuclease VII small subunit BS1330_I0821 dnaE; DNA polymerase III subunit alpha BS1330_I0002 dnaN; DNA polymerase III subunit beta BS1330_I0686 DNA polymerase III subunit chi BS1330_I2051 holA; DNA polymerase III subunit delta BS1330_I0989 DNA polymerase III subunit delta' BS1330_II0620 exonuclease, putative BS1330_II0998 DNA polymerase III subunit epsilon BS1330_I2065 dnaQ; DNA polymerase III subunit epsilon BS1330_I0034 dnaX; DNA polymerase III subunits gamma and tau BS1330_I1098 single-stranded DNA-binding protein family BS1330_I1198 recA; recombinase A BS1330_I1697 ruvA; Holliday junction DNA helicase RuvA BS1330_I1696 ruvB; Holliday junction DNA helicase RuvB BS1330_I1698 ruvC; Holliday junction resolvase BS1330_I1798 priA; primosome assembly protein PriA BS1330_I0450 radA; DNA repair protein RadA BS1330_I0003 recF; recombination protein F BS1330_II0576 recG; ATP-dependent DNA helicase RecG BS1330_I0660 recO; DNA repair protein RecO BS1330_I0032 recR; recombination protein RecR BS1330_I1415 recN; DNA repair protein RecN BS1330_I2097 UvrD/Rep family helicase BS1330_I2096 hypothetical protein BS1330_I0559 hypothetical protein BS1330_I1093 gyrA; DNA gyrase subunit A BS1330_I0125 gyrB; DNA gyrase subunit B BS1330_II0599 topA; DNA topoisomerase I BS1330_I1101 DNA-binding protein HU BS1330_I0774 ihfA; integration host factor subunit alpha BS1330_I0153 ihfB; integration host factor subunit beta BS1330_II0610 DNA polymerase IV BS1330_I1140 lexA; LexA repressor BS1330_I0071 hypothetical protein BS1330_I0070 hypothetical protein BS1330_I0069 dnaE2; error-prone DNA polymerase BS1330_II0819 DEAD-box ATP dependent DNA helicase BS1330_II0313 nrdE; ribonucleotide-diphosphate reductase subunit alpha BS1330_I1039 ribonucleotide-diphosphate reductase subunit alpha BS1330_II0314 nrdF; ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K14160 imuA; protein ImuA K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:bsi03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite