Messenger RNA Biogenesis - Bos taurus (cow)

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     KO
 Eukaryotic type
   mRNA processing factors
   mRNA surveillance and transport factors
     Transport factors
       EJC complex
       TREX complex
       TREX-2 complex
       Nuclear pore complex
       Ran-mediated transport factors
       eIF4F and regulatory proteins
         281751 EIF4E; eukaryotic translation initiation factor 4E
         519920 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform 1
         614570 EIF4E1B; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E type 1B
         286819 EIF4A2; eukaryotic initiation factor 4A-II
         504958 EIF4A1; eukaryotic initiation factor 4A-I
         286870 EIF4G2; eukaryotic translation initiation factor 4 gamma 2
         444858 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X10
         534618 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X2
         505850 EIF4B; eukaryotic translation initiation factor 4B
         517409 EIF4H; eukaryotic translation initiation factor 4H
         509613 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1
         782397 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2
         100533104 EIF4EBP3; eukaryotic translation initiation factor 4E-binding protein 3
         514108 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X2
         540507 ANGEL2; protein angel homolog 2
         508197 ANGEL1; LOW QUALITY PROTEIN: protein angel homolog 1
         507482 FMR1; fragile X mental retardation protein 1
         536793 FXR1; RNA-binding protein FXR1
         618127 FXR2; fragile X mental retardation syndrome-related protein 2
         518833 CYFIP2; cytoplasmic FMR1-interacting protein 2
         100141021 CYFIP1; cytoplasmic FMR1-interacting protein 1
         533444 GEMIN5; gem-associated protein 5 isoform X1
         506194 TACC3; transforming acidic coiled-coil-containing protein 3
         514174 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3
         537016 CPEB3; cytoplasmic polyadenylation element-binding protein 3
         538794 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1
         538880 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1
         510093 DDX3X; ATP-dependent RNA helicase DDX3X
         783057 DDX3Y; DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
         506913 GIGYF2; GRB10-interacting GYF protein 2
         532406 GIGYF1; GRB10-interacting GYF protein 1
         282296 PABPC1; polyadenylate-binding protein 1
         511286 PABPC5; polyadenylate-binding protein 5
         784438 polyadenylate-binding protein 1-like 2
         509864 PABPC1L; polyadenylate-binding protein 1-like isoform X2
         521086 polyadenylate-binding protein 1-like 2
         534576 PABPC4; polyadenylate-binding protein 4
         101908085 PABPC4L; polyadenylate-binding protein 4-like
         510246 PAIP1; polyadenylate-binding protein-interacting protein 1
         536619 PAIP2; polyadenylate-binding protein-interacting protein 2
         789468 PAIP2B; polyadenylate-binding protein-interacting protein 2B
         100139548 SKIC2; superkiller complex protein 2
         509260 DEAF1; deformed epidermal autoregulatory factor 1 homolog
         508412 MCTS1; malignant T-cell-amplified sequence 1
         515358 uncharacterized protein LOC515358
         614238 DENR; density-regulated protein
         112441457 density-regulated protein
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03259 EIF4E; translation initiation factor 4E 
K03257 EIF4A; translation initiation factor 4A 
K03257 EIF4A; translation initiation factor 4A 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03260 EIF4G; translation initiation factor 4G 
K03258 EIF4B; translation initiation factor 4B 
K24086 EIF4H; translation initiation factor 4H 
K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1 
K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 
K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3 
K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
K18729 ANGEL; protein angel 
K18729 ANGEL; protein angel 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K15516 FMR; fragile X mental retardation protein 
K05749 CYFIP; cytoplasmic FMR1 interacting protein 
K05749 CYFIP; cytoplasmic FMR1 interacting protein 
K13133 GEMIN5; gem associated protein 5 
K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K13126 PABPC; polyadenylate-binding protein 
K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
K12599 SKI2; antiviral helicase SKI2 [EC:3.6.4.13] 
K23041 DEAF1; deformed epidermal autoregulatory factor 1 
K07575 MCTS; malignant T-cell-amplified sequence 
K07575 MCTS; malignant T-cell-amplified sequence 
K24272 DENR; density-regulated protein 
K24272 DENR; density-regulated protein 
       APOBEC1-ACF complex
       Other transport factors
     Surveillance factors
     Factors involved in mRNA localization
     mRNA cycle factors
       Common to processing body (P body) and stress granule
       P-body specific factors
         539770 DCP2; m7GpppN-mRNA hydrolase
         783258 DCP1A; mRNA-decapping enzyme 1A
         514548 DCP1B; mRNA-decapping enzyme 1B
         535447 LSM1; U6 snRNA-associated Sm-like protein LSm1
         538662 LSM2; U6 snRNA-associated Sm-like protein LSm2
         614759 LSM3; U6 snRNA-associated Sm-like protein LSm3
         613634 LSM4; U6 snRNA-associated Sm-like protein LSm4
         615136 LSM5; U6 snRNA-associated Sm-like protein LSm5
         615916 LSM6; U6 snRNA-associated Sm-like protein LSm6
         107132243 U6 snRNA-associated Sm-like protein LSm6
         509920 LSM7; U6 snRNA-associated Sm-like protein LSm7
         613630 LSM8; LSM8 homolog, U6 small nuclear RNA associated
         508999 KLC1; kinesin light chain 1
         517633 KLC3; kinesin light chain 3
         518136 KLC2; kinesin light chain 2
         767885 KLC4; kinesin light chain 4
         514078 MYO5B; unconventional myosin-Vb isoform X2
         532574 MYO5C; unconventional myosin-Vc
         541234 MYO5A; unconventional myosin-Va isoform X1
         404053 TUBA1A; tubulin alpha-1B chain
         504244 TUBA1C; tubulin alpha-1C chain
         534900 TUBA3E; tubulin alpha-3 chain
         535605 TUBA1D; tubulin alpha-1D chain
         768036 TUBA8; tubulin alpha-8 chain
         777775 TUBA4A; tubulin alpha-4A chain
         782966 tubulin alpha-1 chain
         100141266 tubulin alpha-1C chain
         539882 TUBA1B; tubulin alpha-1B chain
         100295712 tubulin alpha-3 chain isoform X1
         112443216 tubulin alpha-1C chain
         514174 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3
         537016 CPEB3; cytoplasmic polyadenylation element-binding protein 3
         538794 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1
         538880 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1
         533444 GEMIN5; gem-associated protein 5 isoform X1
         506194 TACC3; transforming acidic coiled-coil-containing protein 3
         541118 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X2
         528167 TNRC6B; trinucleotide repeat-containing gene 6B protein
         504217 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X3
         533968 CNOT1; CCR4-NOT transcription complex subunit 1
         533945 CNOT2; CCR4-NOT transcription complex subunit 2
         527305 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X2
         540891 CNOT4; CCR4-NOT transcription complex subunit 4
         534707 CNOT6; CCR4-NOT transcription complex subunit 6
         518225 CNOT6L; CCR4-NOT transcription complex subunit 6-like
         508055 CNOT7; CCR4-NOT transcription complex subunit 7
         533443 CNOT8; CCR4-NOT transcription complex subunit 8
         617808 GARRE1; granule associated Rac and RHOG effector protein 1
         519222 DIS3L2; DIS3-like exonuclease 2
         538820 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2
         519743 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
         281032 BTG1; protein BTG1
         507934 TOB2; protein Tob2
         519995 BTG4; protein BTG4
         539364 BTG2; protein BTG2
         541054 BTG3; protein BTG3
         768016 TOB1; protein Tob1
         514108 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X2
         537453 PATL1; protein PAT1 homolog 1
         517979 EDC3; enhancer of mRNA-decapping protein 3
         513171 EDC4; enhancer of mRNA-decapping protein 4 isoform X1
         100299090 NANOS2; nanos homolog 2
         781181 UPF2; regulator of nonsense transcripts 2
         616181 UPF3B; regulator of nonsense transcripts 3B
         529442 UPF3A; regulator of nonsense transcripts 3A isoform X2
         132342969 LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A-like
         359715 TRIM21; E3 ubiquitin-protein ligase TRIM21
         531886 TRIM71; E3 ubiquitin-protein ligase TRIM71
         526320 POLR2G; DNA-directed RNA polymerase II subunit RPB7
         347700 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase
         540150 ZAR1; zygote arrest protein 1
         616037 ZAR1L; ZAR1-like protein
         112447755 ZAR1-like protein
         519708 YTHDF3; YTH domain-containing family protein 3
         538525 YTHDF1; YTH domain-containing family protein 1
         541050 YTHDF2; YTH domain-containing family protein 2
K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
K10407 KLC; kinesin light chain 
K10407 KLC; kinesin light chain 
K10407 KLC; kinesin light chain 
K10407 KLC; kinesin light chain 
K10357 MYO5; myosin V 
K10357 MYO5; myosin V 
K10357 MYO5; myosin V 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K07374 TUBA; tubulin alpha 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
K13133 GEMIN5; gem associated protein 5 
K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
K26671 GARRE1; granule associated Rac and RHOG effector protein 1 
K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K14443 TOB; protein Tob/BTG 
K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
K12615 EDC3; enhancer of mRNA-decapping protein 3 
K12616 EDC4; enhancer of mRNA-decapping protein 4 
K18760 NANOS2; protein nanos 2 
K14327 UPF2; regulator of nonsense transcripts 2 
K14328 UPF3; regulator of nonsense transcripts 3 
K14328 UPF3; regulator of nonsense transcripts 3 
K14328 UPF3; regulator of nonsense transcripts 3 
K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27] 
K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] 
K18762 ZAR1; zygote arrest protein 1 
K18762 ZAR1; zygote arrest protein 1 
K18762 ZAR1; zygote arrest protein 1 
K20102 YTHDF; YTH domain-containing family protein 
K20102 YTHDF; YTH domain-containing family protein 
K20102 YTHDF; YTH domain-containing family protein 
       Stress granule specific factors
   mRNA degradation factors
 
 Prokaryotic type

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Last updated: April 9, 2024