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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cak03030]
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03410 Base excision repair [PATH:cak03410]
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03420 Nucleotide excision repair [PATH:cak03420]
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03430 Mismatch repair [PATH:cak03430]
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03440 Homologous recombination [PATH:cak03440]
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 Caul_3011 single-stranded-DNA-specific exonuclease RecJ
Caul_2879 single-strand binding protein
Caul_5171 single-strand binding protein
Caul_5339 single-strand binding protein
Caul_0158 SMC domain protein
Caul_1740 DNA repair protein RecO
Caul_4573 recombination protein RecR
Caul_1392 recA protein
Caul_0221 DNA polymerase I
Caul_0785 DNA recombination protein RuvA domain I
Caul_0786 Holliday junction DNA helicase RuvB
Caul_0784 crossover junction endodeoxyribonuclease RuvC
Caul_2912 DEAD/DEAH box helicase domain protein
Caul_2808 DNA polymerase III, alpha subunit
Caul_0162 DNA polymerase III, beta subunit
Caul_4575 DNA polymerase III, subunits gamma and tau
Caul_5028 DNA polymerase III, delta subunit
Caul_2698 DNA polymerase III, delta prime subunit
Caul_5011 DNA polymerase III, epsilon subunit
Caul_5175 Exonuclease RNase T and DNA polymerase III
Caul_2022 Exonuclease RNase T and DNA polymerase III
Caul_3096 Exonuclease RNase T and DNA polymerase III
Caul_2532 DNA polymerase III chi subunit HolC
Caul_0240 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:cak03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cak03000]
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03021 Transcription machinery [BR:cak03021]
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03019 Messenger RNA biogenesis [BR:cak03019]
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03041 Spliceosome
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03011 Ribosome [BR:cak03011]
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03009 Ribosome biogenesis [BR:cak03009]
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03016 Transfer RNA biogenesis [BR:cak03016]
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03012 Translation factors [BR:cak03012]
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03110 Chaperones and folding catalysts [BR:cak03110]
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04131 Membrane trafficking [BR:cak04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:cak03032]
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03036 Chromosome and associated proteins [BR:cak03036]
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03400 DNA repair and recombination proteins [BR:cak03400]
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Caul_4126 methylated-DNA--protein-cysteine methyltransferase
Caul_4074 methylated-DNA--protein-cysteine methyltransferase
Caul_2919 Deoxyribodipyrimidine photo-lyase
Caul_3569 DNA-3-methyladenine glycosylase
Caul_4368 A/G-specific adenine glycosylase
Caul_5048 endonuclease III
Caul_1412 HhH-GPD family protein
Caul_2020 S1/P1 nuclease
Caul_0937 mutator MutT protein
Caul_3260 NUDIX hydrolase
Caul_3058 NUDIX hydrolase
Caul_4483 NUDIX hydrolase
Caul_1730 NUDIX hydrolase
Caul_5069 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Caul_5050 transcriptional regulator, AraC family
Caul_4048 methylated-DNA--protein-cysteine methyltransferase
Caul_0002 2OG-Fe(II) oxygenase
Caul_3568 Uracil-DNA glycosylase superfamily
Caul_1722 Uracil-DNA glycosylase superfamily
Caul_2166 phage SPO1 DNA polymerase-related protein
Caul_4073 transcriptional regulator, AraC family
Caul_4364 DNA-3-methyladenine glycosylase I
Caul_5075 formamidopyrimidine-DNA glycosylase
Caul_5009 exodeoxyribonuclease III Xth
Caul_3127 exodeoxyribonuclease III Xth
Caul_3011 single-stranded-DNA-specific exonuclease RecJ
Caul_3097 DNA ligase, NAD-dependent
Caul_0221 DNA polymerase I
Caul_3697 excinuclease ABC, A subunit
Caul_4253 excinuclease ABC, B subunit
Caul_4277 excinuclease ABC, C subunit
Caul_1460 UvrD/REP helicase
Caul_3806 DNA helicase II
Caul_0794 DNA-directed RNA polymerase, beta subunit
Caul_0795 DNA-directed RNA polymerase, beta' subunit
Caul_1638 DNA-directed RNA polymerase, alpha subunit
Caul_1727 DNA-directed RNA polymerase, omega subunit
Caul_2619 transcription-repair coupling factor
Caul_0008 DNA mismatch repair protein MutS
Caul_4062 DNA mismatch repair protein MutL
Caul_1226 exodeoxyribonuclease VII, large subunit
Caul_3317 exodeoxyribonuclease VII, small subunit
Caul_2808 DNA polymerase III, alpha subunit
Caul_0162 DNA polymerase III, beta subunit
Caul_2532 DNA polymerase III chi subunit HolC
Caul_5028 DNA polymerase III, delta subunit
Caul_2698 DNA polymerase III, delta prime subunit
Caul_5011 DNA polymerase III, epsilon subunit
Caul_5175 Exonuclease RNase T and DNA polymerase III
Caul_2022 Exonuclease RNase T and DNA polymerase III
Caul_3096 Exonuclease RNase T and DNA polymerase III
Caul_4575 DNA polymerase III, subunits gamma and tau
Caul_2879 single-strand binding protein
Caul_5171 single-strand binding protein
Caul_5339 single-strand binding protein
Caul_4758 DNA mismatch endonuclease Vsr
Caul_1392 recA protein
Caul_0785 DNA recombination protein RuvA domain I
Caul_0786 Holliday junction DNA helicase RuvB
Caul_0784 crossover junction endodeoxyribonuclease RuvC
Caul_3364 endodeoxyribonuclease RusA
Caul_0240 primosomal protein N'
Caul_2504 DNA repair protein RadA
Caul_0158 SMC domain protein
Caul_2912 DEAD/DEAH box helicase domain protein
Caul_1740 DNA repair protein RecO
Caul_4573 recombination protein RecR
Caul_3099 DNA repair protein RecN
Caul_4853 double-strand break repair helicase AddA
Caul_4852 double-strand break repair protein AddB
Caul_4789 protein of unknown function DUF853 NPT hydrolase putative
Caul_1773 Ku protein
Caul_1769 DNA ligase D
Caul_2871 DNA gyrase, A subunit
Caul_0157 DNA gyrase, B subunit
Caul_1505 DNA topoisomerase I
Caul_3640 DNA topoisomerase, type I, putative
Caul_2219 histone family protein DNA-binding protein
Caul_5182 histone family protein DNA-binding protein
Caul_2844 histone family protein DNA-binding protein
Caul_1806 histone family protein DNA-binding protein
Caul_3032 integration host factor, alpha subunit
Caul_0104 integration host factor, beta subunit
Caul_4206 ATP-dependent DNA helicase RecQ
Caul_0473 DNA-directed DNA polymerase
Caul_2024 DNA-directed DNA polymerase
Caul_1494 DNA-directed DNA polymerase
Caul_2782 transcriptional repressor, LexA family
Caul_5203 conserved hypothetical protein
Caul_4463 conserved hypothetical protein
Caul_4462 conserved hypothetical protein
Caul_5202 conserved hypothetical protein
Caul_4461 DNA polymerase III, alpha subunit
Caul_5201 DNA polymerase III, alpha subunit
Caul_1456 helicase c2
Caul_1454 DEAD/H associated domain protein
Caul_3753 NUDIX hydrolase
Caul_3858 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
Caul_4661 ribonucleoside-diphosphate reductase, alpha subunit
Caul_2560 ribonucleotide reductase-related protein
Caul_4709 Ribonucleoside-diphosphate reductase
Caul_3481 hypothetical protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:cak03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Caulobacter sp. K31