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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cbe03030]
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03410 Base excision repair [PATH:cbe03410]
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03420 Nucleotide excision repair [PATH:cbe03420]
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03430 Mismatch repair [PATH:cbe03430]
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03440 Homologous recombination [PATH:cbe03440]
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 Cbei_4321 single-stranded-DNA-specific exonuclease RecJ
Cbei_4878 single-strand binding protein
Cbei_5085 single-strand binding protein
Cbei_0004 DNA replication and repair protein RecF
Cbei_0846 DNA repair protein RecO
Cbei_4949 recombination protein RecR
Cbei_1216 recA protein
Cbei_0801 DNA polymerase I
Cbei_1530 Holliday junction DNA helicase RuvA
Cbei_1531 Holliday junction DNA helicase RuvB
Cbei_1158 ATP-dependent DNA helicase RecG
Cbei_0429 helicase, RecD/TraA family
Cbei_4853 DNA polymerase III, alpha subunit
Cbei_3203 DNA polymerase III, alpha subunit
Cbei_0002 DNA polymerase III, beta subunit
Cbei_4951 DNA polymerase III, subunits gamma and tau
Cbei_0820 DNA polymerase III, delta subunit
Cbei_0115 DNA polymerase III delta' subunit
Cbei_1013 Exonuclease, RNase T and DNA polymerase III
Cbei_1144 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cbe03000]
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03021 Transcription machinery [BR:cbe03021]
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03019 Messenger RNA biogenesis [BR:cbe03019]
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03041 Spliceosome
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03011 Ribosome [BR:cbe03011]
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03009 Ribosome biogenesis [BR:cbe03009]
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03016 Transfer RNA biogenesis [BR:cbe03016]
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03012 Translation factors [BR:cbe03012]
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03110 Chaperones and folding catalysts [BR:cbe03110]
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04131 Membrane trafficking [BR:cbe04131]
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04121 Ubiquitin system [BR:cbe04121]
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03051 Proteasome [BR:cbe03051]
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03032 DNA replication proteins [BR:cbe03032]
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03036 Chromosome and associated proteins [BR:cbe03036]
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03400 DNA repair and recombination proteins [BR:cbe03400]
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Cbei_0456 methylated-DNA--protein-cysteine methyltransferase
Cbei_4891 uracil-DNA glycosylase
Cbei_0072 DNA-3-methyladenine glycosylase
Cbei_0326 8-oxoguanine DNA glycosylase domain protein
Cbei_0580 endonuclease III
Cbei_4883 DEAD_2 domain protein
Cbei_2775 NUDIX hydrolase
Cbei_3449 NUDIX hydrolase
Cbei_2075 NUDIX hydrolase
Cbei_0656 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Cbei_2823 DNA-3-methyladenine glycosylase I
Cbei_2355 exodeoxyribonuclease III Xth
Cbei_0552 apurinic endonuclease Apn1
Cbei_4370 Deoxyribonuclease V
Cbei_2626 Deoxyribonuclease V
Cbei_4321 single-stranded-DNA-specific exonuclease RecJ
Cbei_0352 DNA ligase, NAD-dependent
Cbei_0801 DNA polymerase I
Cbei_4863 excinuclease ABC, A subunit
Cbei_4864 excinuclease ABC, B subunit
Cbei_4859 excinuclease ABC, C subunit
Cbei_4522 Excinuclease ABC, C subunit domain protein
Cbei_0351 UvrD/REP helicase
Cbei_4782 helicase, putative
Cbei_1339 UvrD/REP helicase
Cbei_2724 ATP-dependent DNA helicase replicase
Cbei_2947 UvrD/REP helicase
Cbei_3151 UvrD/REP helicase
Cbei_0144 DNA-directed RNA polymerase, beta subunit
Cbei_0145 DNA-directed RNA polymerase, beta' subunit
Cbei_0180 DNA-directed RNA polymerase, alpha subunit
Cbei_1142 DNA-directed RNA polymerase, omega subunit
Cbei_0086 transcription-repair coupling factor
Cbei_2569 DNA mismatch repair protein MutS
Cbei_0946 MutS2 family protein
Cbei_2115 DNA mismatch repair protein MutS domain protein
Cbei_2565 DNA mismatch repair protein MutL
Cbei_1703 exodeoxyribonuclease VII, large subunit
Cbei_1704 Exonuclease VII, small subunit
Cbei_4853 DNA polymerase III, alpha subunit
Cbei_3203 DNA polymerase III, alpha subunit
Cbei_0002 DNA polymerase III, beta subunit
Cbei_0820 DNA polymerase III, delta subunit
Cbei_0115 DNA polymerase III delta' subunit
Cbei_1013 Exonuclease, RNase T and DNA polymerase III
Cbei_4951 DNA polymerase III, subunits gamma and tau
Cbei_4878 single-strand binding protein
Cbei_5085 single-strand binding protein
Cbei_0429 helicase, RecD/TraA family
Cbei_1216 recA protein
Cbei_1530 Holliday junction DNA helicase RuvA
Cbei_1531 Holliday junction DNA helicase RuvB
Cbei_1144 primosomal protein N'
Cbei_0981 SMC domain protein
Cbei_1619 conserved hypothetical protein
Cbei_0476 conserved hypothetical protein
Cbei_0980 nuclease SbcCD, D subunit
Cbei_0475 metallophosphoesterase
Cbei_0126 DNA repair protein RadA
Cbei_0004 DNA replication and repair protein RecF
Cbei_1158 ATP-dependent DNA helicase RecG
Cbei_0846 DNA repair protein RecO
Cbei_4949 recombination protein RecR
Cbei_1710 DNA repair protein RecN
Cbei_0014 Recombination helicase AddA
Cbei_0013 ATP-dependent nuclease subunit AddB
Cbei_0007 DNA gyrase, A subunit
Cbei_0006 DNA gyrase, B subunit
Cbei_1186 DNA topoisomerase I
Cbei_0091 histone family protein DNA-binding protein
Cbei_1621 RecT protein
Cbei_4475 ATP-dependent DNA helicase RecQ
Cbei_1824 ATP-dependent DNA helicase RecQ
Cbei_4241 DNA-directed DNA polymerase
Cbei_2561 SOS-response transcriptional repressor, LexA
Cbei_2402 regulatory protein RecX
Cbei_2015 Exonuclease, RNase T and DNA polymerase III
Cbei_0194 ribonucleoside-diphosphate reductase, alpha subunit
Cbei_0195 Ribonucleoside-diphosphate reductase
Cbei_1204 phosphoesterase, RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:cbe03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Clostridium beijerinckii NCIMB 8052