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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:cby03030]
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03410 Base excision repair [PATH:cby03410]
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03420 Nucleotide excision repair [PATH:cby03420]
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03430 Mismatch repair [PATH:cby03430]
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03440 Homologous recombination [PATH:cby03440]
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 CLM_3130 recJ; single-stranded-DNA-specific exonuclease RecJ
CLM_4132 ssb; single-strand binding protein
CLM_0463 single-strand binding domain protein
CLM_0004 recF; DNA replication and repair protein RecF
CLM_0039 recR; recombination protein RecR
CLM_2697 recA; recA protein
CLM_3411 polA; DNA polymerase I
CLM_3476 ruvA; Holliday junction DNA helicase RuvA
CLM_3475 ruvB; Holliday junction DNA helicase RuvB
CLM_2795 recG; ATP-dependent DNA helicase RecG
CLM_0217 helicase, RecD/TraA family
CLM_3836 dnaE; DNA polymerase III, alpha subunit
CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type
CLM_0002 dnaN; DNA polymerase III, beta chain
CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit
CLM_3363 holA; DNA polymerase III, delta subunit
CLM_0099 putative DNA polymerase III, delta prime subunit
CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family
CLM_2811 priA; primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:cby03000]
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03021 Transcription machinery [BR:cby03021]
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03019 Messenger RNA biogenesis [BR:cby03019]
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03041 Spliceosome
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03011 Ribosome [BR:cby03011]
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03009 Ribosome biogenesis [BR:cby03009]
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03016 Transfer RNA biogenesis [BR:cby03016]
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03012 Translation factors [BR:cby03012]
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03110 Chaperones and folding catalysts [BR:cby03110]
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04131 Membrane trafficking [BR:cby04131]
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04121 Ubiquitin system [BR:cby04121]
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03051 Proteasome [BR:cby03051]
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03032 DNA replication proteins [BR:cby03032]
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03036 Chromosome and associated proteins [BR:cby03036]
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03400 DNA repair and recombination proteins [BR:cby03400]
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CLM_1766 ogt; methylated-DNA-(protein)-cysteine S-methyltransferase
CLM_1424 DNA-3-methyladenine glycosylase
CLM_3737 putative 8-oxoguanine DNA glycosylase
CLM_0259 nth; endonuclease III
CLM_0603 putative ATP-dependent helicase
CLM_0761 putative mutator mutT protein
CLM_1391 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
CLM_0056 uracil-DNA glycosylase family protein
CLM_0117 udgA; uracil-DNA glycosylase
CLM_0746 conserved domain protein
CLM_1718 xth; exodeoxyribonuclease III
CLM_3131 AP endonuclease, family 2
CLM_3130 recJ; single-stranded-DNA-specific exonuclease RecJ
CLM_3704 ligA; DNA ligase, NAD-dependent
CLM_3411 polA; DNA polymerase I
CLM_3848 uvrA; excinuclease ABC, A subunit
CLM_3849 uvrB; excinuclease ABC, B subunit
CLM_3842 uvrC; excinuclease ABC, C subunit
CLM_3616 GIY-YIG domain protein
CLM_1495 helicase, UvrD/REP/exonuclease family protein
CLM_3786 conserved hypothetical protein
CLM_3705 pcrA; ATP-dependent DNA helicase PcrA
CLM_1591 hypothetical protein
CLM_0852 conserved hypothetical protein
CLM_3300 putative helicase
CLM_3956 rpoB; DNA-directed RNA polymerase, beta subunit
CLM_3955 rpoC; DNA-directed RNA polymerase, beta' subunit
CLM_3919 rpoA; DNA-directed RNA polymerase, alpha subunit
CLM_2813 rpoZ; DNA-directed RNA polymerase, omega subunit
CLM_4031 mfd; transcription-repair coupling factor
CLM_1957 mutS; DNA mismatch repair protein MutS
CLM_3528 MutS2 family protein
CLM_0739 MutS domain protein
CLM_1956 DNA mismatch repair protein MutL
CLM_2102 xseA; exodeoxyribonuclease VII, large subunit
CLM_2101 xseB; exodeoxyribonuclease VII, small subunit
CLM_3836 dnaE; DNA polymerase III, alpha subunit
CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type
CLM_0002 dnaN; DNA polymerase III, beta chain
CLM_3363 holA; DNA polymerase III, delta subunit
CLM_0099 putative DNA polymerase III, delta prime subunit
CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family
CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit
CLM_4132 ssb; single-strand binding protein
CLM_0463 single-strand binding domain protein
CLM_2538 D12 class N6 adenine-specific DNA methyltransferase superfamily
CLM_0217 helicase, RecD/TraA family
CLM_2697 recA; recA protein
CLM_3476 ruvA; Holliday junction DNA helicase RuvA
CLM_3475 ruvB; Holliday junction DNA helicase RuvB
CLM_2811 priA; primosomal protein N'
CLM_0556 sbcC; exonuclease SbcCD, C subunit
CLM_0555 sbcD; exonuclease SbcCD, D subunit
CLM_3979 radA; DNA repair protein RadA
CLM_0004 recF; DNA replication and repair protein RecF
CLM_2795 recG; ATP-dependent DNA helicase RecG
CLM_0039 recR; recombination protein RecR
CLM_2094 recN; DNA repair protein recN
CLM_0518 addA; ATP-dependent nuclease subunit A
CLM_0506 addB; ATP-dependent nuclease subunit B
CLM_0007 gyrA; DNA gyrase, A subunit
CLM_0006 gyrB; DNA gyrase, B subunit
CLM_2730 topA; DNA topoisomerase
CLM_4026 hup; DNA-binding protein HU
CLM_2857 recombinase, phage RecT family
CLM_1150 recQ; ATP-dependent DNA helicase RecQ
CLM_3181 dinB; DNA polymerase IV
CLM_1952 lexA; LexA repressor
CLM_3586 recX; regulatory protein RecX
CLM_3178 nrdA; ribonucleoside-diphosphate reductase, alpha subunit
CLM_3177 nrdB; ribonucleoside-diphosphate reductase, beta subunit
CLM_2709 DHH family protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K07455 recT; recombination protein RecT
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:cby03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Clostridium botulinum A2